Basic Information

Gene Symbol
-
Assembly
GCA_028673005.1
Location
CM054112.1:16477838-16485725[+]

Transcription Factor Domain

TF Family
GTF2I
Domain
GTF2I domain
PFAM
PF02946
TF Group
Other Alpha-Helix Group
Description
This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.023 4.2e+02 4.1 0.0 37 56 14 34 8 45 0.79
2 8 0.022 3.9e+02 4.2 0.0 37 56 289 309 279 320 0.80
3 8 0.022 3.9e+02 4.2 0.0 37 56 564 584 554 595 0.80
4 8 0.022 3.9e+02 4.2 0.0 37 56 839 859 829 870 0.80
5 8 0.022 3.9e+02 4.2 0.0 37 56 1114 1134 1104 1145 0.80
6 8 0.022 3.9e+02 4.2 0.0 37 56 1389 1409 1379 1420 0.80
7 8 0.022 3.9e+02 4.2 0.0 37 56 1645 1665 1635 1676 0.80
8 8 0.022 3.9e+02 4.2 0.0 37 56 1920 1940 1910 1951 0.80

Sequence Information

Coding Sequence
atgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtctctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttaggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgtcccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttaggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgacaacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctaaggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacgtccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttctttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgccacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaagaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttaggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgacaacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctaaggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacgtccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttctttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgttttcttcgggggggataacgtcgcggcttagggacacggtttccgagtag
Protein Sequence
MLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVSPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARQRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSKAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSSVTLRISIVPPRIRLFGRPAAPRPPPRRNRPTCFRRIPEFGRRLPSHPRDDCPLSAPPNEPLAAPDKSAPALDHADAPRHLAKIRLPRAYTAPINRQEVFPLSLSRGLLSFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARQRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSKAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSSVTLRISIVPPRIRLFGRPAAPRPPPRRNRPTCFRRIPEFGRRLPSHPRDDCPLSAPPNEPLAAPDKSAPALDHADAPRHLAKIRLPRAYTAPINRQEVFPLSLSRGLLSFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQAFSSGGITSRLRDTVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01402113;
90% Identity
-
80% Identity
-