Basic Information

Gene Symbol
-
Assembly
GCA_028673005.1
Location
CM054112.1:16576135-16588666[+]

Transcription Factor Domain

TF Family
GTF2I
Domain
GTF2I domain
PFAM
PF02946
TF Group
Other Alpha-Helix Group
Description
This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.033 5.9e+02 3.6 0.0 37 56 314 334 304 345 0.80
2 11 0.033 5.9e+02 3.6 0.0 37 56 589 609 579 620 0.80
3 11 0.033 5.9e+02 3.6 0.0 37 56 815 835 805 846 0.80
4 11 0.033 5.9e+02 3.6 0.0 37 56 1041 1061 1031 1072 0.80
5 11 0.033 5.9e+02 3.6 0.0 37 56 1297 1317 1287 1328 0.80
6 11 0.033 5.9e+02 3.6 0.0 37 56 1572 1592 1562 1603 0.80
7 11 0.033 5.9e+02 3.6 0.0 37 56 1798 1818 1788 1829 0.80
8 11 0.033 5.9e+02 3.6 0.0 37 56 2073 2093 2063 2104 0.80
9 11 0.033 5.9e+02 3.6 0.0 37 56 2348 2368 2338 2379 0.80
10 11 0.0087 1.6e+02 5.5 0.0 33 56 2608 2632 2603 2643 0.78
11 11 0.033 5.9e+02 3.6 0.0 37 56 2868 2888 2858 2899 0.80

Sequence Information

Coding Sequence
atggcgggaacctttatttgcccgggtcgttcggccccaactacgtatgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgttttcttcgggggggataacgtcgcggcttagggacacggtttccgaacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgaaaccaaaaccgacttgcgaagtaaaatccacgccccgtaaaacgtgccaccagcgaacacgggtgggttgcctttggcctcttagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttctttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgaaaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgaaaccaaaaccgacttgcgaagcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttctttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgaaaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgttttcttcgggggggataacgtcgcggcttagggacacgcaacgacccaccggttttcccctggagggacacccatccaagtactggccgggaccaacgatgcttcacgccggtgatcttacgagaaccggtggttccatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttctttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgtgtcacctaaggtcgggctcttggtggcaccgaccaaatatttggcgcatccgtggccgagctaaaaaggcagtcgcgccgaaggaggtgcggaagggcggtcacccatccaagtactatccgggccctacgatgcttaacttcggtgatcggacgagaaccggtgttttcatcgtggtatggtcgttgccgagagatttaagccttcgacgccctaagacacattacaccttatcggcgatccgtcgatatttccatacccgcgccgcctcaaccgagaccaaaaccgacttgcgaagtccgtggccgaatttaaaatatgccgccatccgcatgacctctcccgtcgctccgaggcagtgtgactctccgaatttcaattgtccccccacggatccgcctcttcggacggccagcggcacctcgcccccctccccggcgaaatcgccccacgtgttttcgaaggatccccgaattcggccgccgactaccatcccacccccgcgacgactgcccgctctctgccccgccgaacgagcccctcgccgcccccgacaagtcggccccggcgctcgaccacgcggacgctccccggcacttggcgaaaattcgcctccctcgggcctatacggctccaataaaccgtcaggaggtcttccccttatcgctgtccaggggtttgctttcttttttttaacggtgaaaatttcatctatggcgggaacctttatttgcccgggtcgttcggccccaactacgtgtgggtggcgtaaatgccctcctcacccctcgcgacaggggagaattccccccatacctcaggcgttttcttcgggggggataacgtcgcggcttagggacacggtttccgagtag
Protein Sequence
MAGTFICPGRSAPTTYGWRKCPPHPSRQGRIPPIPQAFSSGGITSRLRDTVSEHITPYRRSVDISIPAPPQPKPKPTCEVKSTPRKTCHQRTRVGCLWPLSVTLRISIVPPRIRLFGRPAAPRPPPRRNRPTCFRRIPEFGRRLPSHPRDDCPLSAPPNEPLAAPDKSAPALDHADAPRHLAKIRLPRAYTAPINRQEVFPLSLSRGLLSFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGCHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGCHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSSVTLRISIVPPRIRLFGRPAAPRPPPRRNRPTCFRRIPEFGRRLPSHPRDDCPLSAPPNEPLAAPDKSAPALDHADAPRHLAKIRLPRAYTAPINRQEVFPLSLSRGLLSFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGCHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQAFSSGGITSRLRDTQRPTGFPLEGHPSKYWPGPTMLHAGDLTRTGGSIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSSVTLRISIVPPRIRLFGRPAAPRPPPRRNRPTCFRRIPEFGRRLPSHPRDDCPLSAPPNEPLAAPDKSAPALDHADAPRHLAKIRLPRAYTAPINRQEVFPLSLSRGLLSFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQACHLRSGSWWHRPNIWRIRGRAKKAVAPKEVRKGGHPSKYYPGPTMLNFGDRTRTGVFIVVWSLPRDLSLRRPKTHYTLSAIRRYFHTRAASTETKTDLRSPWPNLKYAAIRMTSPVAPRQCDSPNFNCPPTDPPLRTASGTSPPSPAKSPHVFSKDPRIRPPTTIPPPRRLPALCPAERAPRRPRQVGPGARPRGRSPALGENSPPSGLYGSNKPSGGLPLIAVQGFAFFFLTVKISSMAGTFICPGRSAPTTCGWRKCPPHPSRQGRIPPIPQAFSSGGITSRLRDTVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01402113;
90% Identity
-
80% Identity
-