Basic Information

Insect: Tachystola acroxantha
Gene Symbol: -
Assembly: GCA_963506565.1
Location: OY735878.1:1267707-1269557[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.6 4.3e+02 2.2 1.6 3 19 147 163 145 168 0.91

2 8 0.0037 0.24 12.5 0.5 3 23 178 198 177 198 0.97

3 8 0.64 41 5.4 0.8 1 21 202 222 202 223 0.92

4 8 0.0043 0.28 12.3 0.1 2 23 239 259 238 259 0.97

5 8 5.6e-05 0.0036 18.2 0.3 1 23 265 288 265 288 0.94

6 8 0.0002 0.013 16.5 1.2 1 23 294 317 294 317 0.97

7 8 0.00016 0.01 16.8 1.3 3 23 325 345 323 345 0.97

8 8 0.00017 0.011 16.7 5.2 1 23 351 373 351 373 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.6	4.3e+02	2.2	1.6	3	19	147	163	145	168	0.91
2	8	0.0037	0.24	12.5	0.5	3	23	178	198	177	198	0.97
3	8	0.64	41	5.4	0.8	1	21	202	222	202	223	0.92
4	8	0.0043	0.28	12.3	0.1	2	23	239	259	238	259	0.97
5	8	5.6e-05	0.0036	18.2	0.3	1	23	265	288	265	288	0.94
6	8	0.0002	0.013	16.5	1.2	1	23	294	317	294	317	0.97
7	8	0.00016	0.01	16.8	1.3	3	23	325	345	323	345	0.97
8	8	0.00017	0.011	16.7	5.2	1	23	351	373	351	373	0.98

Sequence Information

Coding Sequence: atggCCTACAAGGACCGCTGCCGCACTTGTCTAGGAATTAACAAAGACATGCGACATATTGAATCCACCATTTCCATTGCGGGTTTAGACGTTCGCATTTCCGATATTTTGCACAACTTTTACGgttataatGTCCAGATTGAAGAGCATCATATATACCCAGAAAACGTCTGCATAAACTGCGTACACCATCTCACGTTGACACATTCCTTCAAGGCCCTTATAGAAAACAGCCTGAACACGTTAAAAGAAAACATCAACAACTTAAACACGGACAATGACAACTTCTACTGCAATTCCGACTTGGACGAGCAAAAACCAGACCTCATCGAATATAAACCTGAAATAATAAAaggtataaaaacaaaacgaaGACCAAGATTGAGAAGATCACAGATTTCCTTTAAGAGAACCGTGTCGTTTGAAAGACATCTGTTTTGTGTCGAATGCAAAGCTGAATTTCATTCGTTCCAATCGTTAAGAGATCACTGTACGAACAATCATCCAACGAAGAACACAGTAGGACGGGATTGTGAATACTGCAATGAAAAATTTGGAGATTTCAAGGAACTAGTAATGCATAGGAAACTGCATTTAAAACCTTACTTATGTCTGACATGCTGGACTGGATTCTTCAATGAAAATGACTTTGAATCTCATATATGCCAACCGAACCAAAGTAGAAGGACAAATACAAACgagaaagttttaaaacagTGTGACCAGTGCGGAAAATCATATCCTCCTGGGTACATTAAAATCCACATGGCAACCCATGGCGACGAGCTCCGATACAGCTGTAATTATTGCCCAAAGAAGTTCAAAGTTGCCAACGGTCTAAATTCCCATGTTTTATGGAATCACAAACGTACTAGGAACCATAAGTGCGACGTTTGCGATGCTACGTTCATTTCTGCGAGTTCAAGAAGCAGTCATATTCGCAAAAATCACTTGAAAGAGAAGAAATATGGATGTGAGAGTTGTGTAAAGAGGTTTTTCTCTAAATCAGAGTTACAACGGCATACTTTGACACATACCGGTGTAAAGAACTTTCATTGTCACTTATGTGATAAATCTTATCAGACTAGGTACGGTTTGAACGTACATTTGAAGTCGCACACGCATATGTCTGTAAGTGTTCTGAATATGTAA
Protein Sequence: MAYKDRCRTCLGINKDMRHIESTISIAGLDVRISDILHNFYGYNVQIEEHHIYPENVCINCVHHLTLTHSFKALIENSLNTLKENINNLNTDNDNFYCNSDLDEQKPDLIEYKPEIIKGIKTKRRPRLRRSQISFKRTVSFERHLFCVECKAEFHSFQSLRDHCTNNHPTKNTVGRDCEYCNEKFGDFKELVMHRKLHLKPYLCLTCWTGFFNENDFESHICQPNQSRRTNTNEKVLKQCDQCGKSYPPGYIKIHMATHGDELRYSCNYCPKKFKVANGLNSHVLWNHKRTRNHKCDVCDATFISASSRSSHIRKNHLKEKKYGCESCVKRFFSKSELQRHTLTHTGVKNFHCHLCDKSYQTRYGLNVHLKSHTHMSVSVLNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -