Tacr023469.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735899.1:5494770-5507485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 1e+02 4.2 0.2 1 23 329 351 329 351 0.96 2 11 0.0061 0.39 11.8 4.8 2 23 359 381 359 381 0.93 3 11 3.4 2.2e+02 3.2 0.5 1 13 385 397 385 403 0.79 4 11 0.00061 0.039 14.9 1.1 1 23 418 441 418 441 0.95 5 11 3.9 2.5e+02 3.0 5.8 2 20 446 464 445 466 0.89 6 11 0.046 3 9.0 0.5 2 23 504 526 503 526 0.93 7 11 0.00045 0.029 15.4 0.7 2 23 536 558 535 558 0.95 8 11 0.00036 0.023 15.7 0.5 1 23 563 586 563 586 0.95 9 11 0.00018 0.012 16.6 3.0 1 23 591 614 591 614 0.94 10 11 0.0001 0.0066 17.4 0.3 2 23 626 647 625 647 0.96 11 11 7.6e-05 0.0049 17.8 5.8 1 23 653 676 653 676 0.96
Sequence Information
- Coding Sequence
- ATGAATTTGTGCGCTACATGTCTAAGCAGCGACCGGCGAATGGTACCAGCTAAAAGTTTATCCGATTTTTGCCGTTTGTTCCCCTTTTTAACACTGAACCAGATGCACGACCAGTTGTGCTGGGAATGCAGTACCATGCTGATCAAGATGTGGAAATTCCACCAGCAGGCTTATAGAGCTCGCCAAGTGCTGAGGAATCAGGAGAGGAATCAGCAGAGATATGTTAAGATAGCGCCAAAACCTAGTGATCCATTGAATCCGTACACTTTCAACAAGATTATCAATGAAACGCTGGTAAATGATGCACCAAGCACTGTCAGTGTTACGTGTTTCAAAGAAGAACGTATTAAAACAGAGCCAGAATGGATTGAACCTCAATCTAATGTGACTACTGAAGACCCGCTATTcttgaatgatataaaaattgAGATTGAAGTACCGAAACCTGATATAAATTCAACTGAATCTGTCACTTGTAAGCATACGACTAAAAACCTCATCGACCATGATTATGTGAAATCCGATTCTGAAACTGAAACGGCTGATAATTTGAGTTATTATGATGAATGTGACGATAATTTCGACCTACCTTTCGACTATAAGCATTTAGAAGAGATTATTACTGAAAAAGCTAGAAATAAACAATCTAATACGACTATAAACAAAGCTGACAATGCTGAAACAAGCGATTTGTATCAGAATGCCAGTAAAGCTATTTCTAATAAATGCCAATCTAATAATCTTTTAAAAAGCACCAAACAAGTAAAAGCATCAAATTCAAAGAAGTATGTCACATTTAATTTAGCCACAATTAAGAGAACGACTGAAGTCAAAAGCGTACCCAAAAAAAAGACTTCCAATAACCCGAAACCTTTAAAAGTTTATAGTTTTAATCTCAATATAAGAGAAATGGAAATAGATGAGAAGGAAATGCTGGAATTTCGCGAGAAAGAGCGAAATAGCGATACTTATTTGCGGTCACAGTTTAAATGTGAGAAGTGTATACTTGGATTTGGCGAAGAAGAGTTATATGAAAATCATCTTTCTAAACATAGCGAGGAGTCTGGCCCAGAAGTGTGCAAAATATGTGAACAGAGGTTCCACAATAGAGATGAGTTGAGAaagcattattcacatacacATTACAGGCTATTCCGTTGCTCCATGTGCAAGTATTCGAGCCGGTCCCTGCAGCCCGTGCAGGAGCACTGCGAGGGCTGCACGCGCGCCTGGCTGCACCGCCCCTACAAACACATGTGCAACGTGTGTGGGGAGGAATTCCGCACGTCCAAGCAGGTGTCGCAGCACCGCGCCCGCTGGCACACGGCGCCCGTGCAATGCCGACACTGCTACAAGGAGTTCAGCACACAGCAGTCCTGCAACCACCACGAGAAGTTCCTCACAATGTGGTTGGACCTTTGCCCTGTAGAATACGGGTTCCTCACTATATGGTGGGACCTGTGCCCTGTAGAATACAGGGTGCACTCCGCGGCTGCCACGCAGCTGATCCAGTGCAATAAATGCGACGTGCGCGTTCGCGGCAAGAGAGCGCTGGCCAAACACAAGCTCTACAAACACAAGGTCCAGACTGATGCTGCCCGCAGTTACTGCAAGGAGTGCGACAAATTCTACGCCAACAAGATGTCGTATGAGGCGCACGTGCGCCTCAAGCATGCGCCGTATAGGTTCGAGTGTGACGAATGCCACAAGCGGTACTCGGCCAAGACGTACCTCGCCGACCACATCATGGGCGTGCATCTCAAACACAAGCACGCGTGCGCGCAATGCGATAAGGTATATTCGACCAAGCACGGTCTTCGTACACACACGCGGCTGCTCCACGAGGCCAGGCctccgcccccgcgcccgcgccaaGTCTGTCCGCACTGCGGGAAGACTTTTGCGTCCGCCTCGATACTCCGAATCCACTCGATCACTCACACTGGCAACAAACCGTATCACTGTCAGCATTGCGAGTGGAAGTTCGCGCAGAAATCCACTCTACGAACACACATGAAACTCAAGCACAAGGATATAATAACCACGAGTACTGGGATATAA
- Protein Sequence
- MNLCATCLSSDRRMVPAKSLSDFCRLFPFLTLNQMHDQLCWECSTMLIKMWKFHQQAYRARQVLRNQERNQQRYVKIAPKPSDPLNPYTFNKIINETLVNDAPSTVSVTCFKEERIKTEPEWIEPQSNVTTEDPLFLNDIKIEIEVPKPDINSTESVTCKHTTKNLIDHDYVKSDSETETADNLSYYDECDDNFDLPFDYKHLEEIITEKARNKQSNTTINKADNAETSDLYQNASKAISNKCQSNNLLKSTKQVKASNSKKYVTFNLATIKRTTEVKSVPKKKTSNNPKPLKVYSFNLNIREMEIDEKEMLEFREKERNSDTYLRSQFKCEKCILGFGEEELYENHLSKHSEESGPEVCKICEQRFHNRDELRKHYSHTHYRLFRCSMCKYSSRSLQPVQEHCEGCTRAWLHRPYKHMCNVCGEEFRTSKQVSQHRARWHTAPVQCRHCYKEFSTQQSCNHHEKFLTMWLDLCPVEYGFLTIWWDLCPVEYRVHSAAATQLIQCNKCDVRVRGKRALAKHKLYKHKVQTDAARSYCKECDKFYANKMSYEAHVRLKHAPYRFECDECHKRYSAKTYLADHIMGVHLKHKHACAQCDKVYSTKHGLRTHTRLLHEARPPPPRPRQVCPHCGKTFASASILRIHSITHTGNKPYHCQHCEWKFAQKSTLRTHMKLKHKDIITTSTGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -