Tacr019415.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963506565.1
- Location
- OY735891.1:7980908-8001402[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1e-05 0.0013 19.6 1.3 1 23 255 277 255 277 0.98 2 13 0.03 1.9 9.6 2.3 1 23 285 308 285 308 0.92 3 13 5.2 3.4e+02 2.6 0.3 1 22 312 333 312 335 0.83 4 13 0.0017 0.11 13.6 1.8 1 23 410 432 410 432 0.99 5 13 0.018 1.2 10.3 1.1 2 23 441 463 440 463 0.96 6 13 0.75 48 5.2 2.1 1 23 467 489 467 489 0.98 7 13 0.0003 0.019 15.9 3.7 1 23 494 517 494 517 0.98 8 13 1.8 1.1e+02 4.0 2.3 1 23 521 544 521 544 0.83 9 13 0.94 61 4.9 0.1 2 20 564 582 563 584 0.93 10 13 1 67 4.8 0.1 2 23 629 651 628 651 0.88 11 13 9.1e-06 0.00059 20.7 2.3 1 23 660 682 660 682 0.99 12 13 0.00053 0.034 15.1 1.0 3 23 690 710 688 710 0.96 13 13 1.1e-05 0.0007 20.4 2.7 1 23 716 739 716 739 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACCTAAAAGCATGCATAGTGTGCTTCAGCTCACAAGTAAAATTGTTTAAAATCGACAGCGGACAACTGGGATGCGATTACTTTTCAGTATCCGGTTTGAAGGCCAGTGAAACTGTAGGCATGCCTCAGTATTTGTGTGTCGAGTGCTCGGCTTATGTGAATAGGTTCGCTAAGTTCAGAGGAAAATGCAAGAGAGCCCACTTTGCACTGACAGAGATTCTGAAAATTAATAAACAGGTAACGCTGTCAAACTTGCAATCAATCGACCGCAAACAGATTGACATAATGCCAACATTATCATATTTAAACTTGAATAAATCCCATTACAAAGACGTCAAATTCCAATGGGTGAAACACAACCGTCCCGGTATAGCCAAAAATGATACAATACCTATATTTCACTACACTACTCTTACTCGTGAACATGTATTCAAGGAACCTACGCTAGCTAAGAAACCTACTCCGGTAATAGATGAAAAGATTGTGAAAACAGAAACTGATGATAAGGTAGACTTAGATGAAATTTTGGAGCAATCGACATCATCTGTAAATCAGACTGATTATTTTGAGAACGATGACTATGAAAGTGACATACATGCCCAAGATGAACTCCTTGTTTGTAAGTCGGAGAATAAAGACGATCAAGCCGATGGAACAGAGTTCGATGAGGAATACGCTAATATGATACCGATATCTGAGAAGGAAATGCGAGCTGCAGTGgatatatacaaaatgtttacatCGGGAAATGGAGATTTCGAATGTAATGTTTGCAGCAAATCGTTTAAGAATGAGGACAGATATAACGTACATTTACGTATGCATGATAAGCACATGAGCGGCAACTTCTTGTGTACATTGTGCAACTTCTACTACAAGACTGAGTATATGCTTAAAACGCACATGACGGAGAAACATCTGTACAAGTATGTGTGCAGGAAGTGCCCTGAAGTTAGCTTCGATAGAATATCCGCGAAACAGCACTTCATCTGGACTCACCTTCAGAAGGGCAGCAAGAAGCACGCCAACTGGTACGAGTCGCGCCCCTCGTGGGTCGGCGCGCGCGGCGGACCACGCACCAAGGGCATCGTGTCACTACGCCCGGTCAGGAAGATCAAAAAGTTGCCAGAAGACTTTCCGGTGTACTCCCCAATCCGTCACGAGGAGCAGTACGAgctggtgcgcgcgcgccgcggcaCGCGCAATTATATCGACGCGCACTTCAAGTGCGAACTCTGCTATAGAGGCTTCCGGGAGGTAGACACGTACAGCAACCACATGCGGAAACATGACCCGGACATCTCCGGCCCGCTGCAGTGCGACATGTGCAAGCTGTACTTCCGCGACGCGCGGCGCATGTACAAGCACATGAACATCACGCACCTGTACAAGTACTCGTGCCAGCAGTGCGCGTTCGTGTGCTACAACAGAGGTCAAGCGCAGATGCACTACAGATGGCACAAGAACGTGACCTACCAGTGTCCACACTGCAGTAGGGAGTTCAAGAAATCGTCTACCCGCCTTACGCACATCCGTATAAAGCACCCATCGTGCTTCATCTGCAACCTGTGCGGCCACAGCTACGTCAGCGAGAACGGGCTGTACTGCCACAAGAAGCTGGCCCACACGGCGCAGGATATAGAGCAGAGTGAATCAGTTGTTGTGAACCCAGCTGACTCGCAGTACTGCGCCGACTGTAACGTGCAGTTCATGTCGGAAGCCGCCTTCAAAACGCACCTGGGAAGCTCCATTAAGCATGCTACCACTAATCTGTCCGTGAAGCAGCCACGACTGACGAAGGCGGGCGAGCGCAGACGCCGCGGCCGACCCCGGAACGGCCCCTCGCAGATAGTCAACAACGGCATACCCACTGCCACGGAATGTGAAGTGTGCGGCAAGTTGCTGAGTAACGACGTGCAGGCGCGCAAGCACTACGAGGCGGAGCACCCCGGCGCCGAGTTCCTCAAGCGGTACATGTGCCACGTGTGCGGGCACGCCACAAGGCAATACGCGAACCTGATGGTGCACATGCGCACTCACACCGACGAGAAACCGTACGGCTGCCCGCACTGCGAGCGCCGCTTCAGCATGCCGAGCAACAGGAACAGGCACCTAGTCGTCCACACCGGTGAGAAGCGGTTCCAGTGCCAGCACTGCAACCGCCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACCGTGCACCTCAAGATACCGTACGCGCCCTGGGACAAGAAGAATAGGAAGCGACGCAAGGTACGCTCCCAGACAGACGGGGGACagactatacagggggcctcaatgacgCAGAACAGCGCCGTCAAGCTGCACATACAGACCGTGCACCTCAAGATACCGTACGCGCCCTGGGACAAGAAGAATAGGAAGCGACGCAAGGAAGCGACGCAAGGTACGCTCCCAGACAGACGGGGGACagactatacagggggcctcgatgaCGCAGAGCAGCGCCGTCAAGCTGCACATACAGACCTCAAGATACCGTACGCGCCCTGGGACAAGAAGAATAGGAAGCGACGCAAGGTACACTCCCAGACAGATGGGGGACAGactatacagggggtctcaatgaCGCAGAACAGCGCCGTCAAGCTGCACATACAGACCGTGCACCTCAAGATACCGTACGCGCCCTGGGACAAGAAGAATAGGAAGCGACGCAAGAGCAGCGCCGTCAAGCTGCACATACAGACCGTGCACCTAAAGATACCGTACGCGCCCTGGGACAAGAAGAATAGGAAGCGACGCAAGGAGTTGGAAGGCACCTCAGCTCCGGTAAGCGCGGTGGTGTCAGCCGCGTGCCTGCCGCCGCCGCCCAAGCTCCTATTCGAGCCACAAGGAGACTATCTCAACGCCTACATCACTTACAACGAGTGA
- Protein Sequence
- MWDLKACIVCFSSQVKLFKIDSGQLGCDYFSVSGLKASETVGMPQYLCVECSAYVNRFAKFRGKCKRAHFALTEILKINKQVTLSNLQSIDRKQIDIMPTLSYLNLNKSHYKDVKFQWVKHNRPGIAKNDTIPIFHYTTLTREHVFKEPTLAKKPTPVIDEKIVKTETDDKVDLDEILEQSTSSVNQTDYFENDDYESDIHAQDELLVCKSENKDDQADGTEFDEEYANMIPISEKEMRAAVDIYKMFTSGNGDFECNVCSKSFKNEDRYNVHLRMHDKHMSGNFLCTLCNFYYKTEYMLKTHMTEKHLYKYVCRKCPEVSFDRISAKQHFIWTHLQKGSKKHANWYESRPSWVGARGGPRTKGIVSLRPVRKIKKLPEDFPVYSPIRHEEQYELVRARRGTRNYIDAHFKCELCYRGFREVDTYSNHMRKHDPDISGPLQCDMCKLYFRDARRMYKHMNITHLYKYSCQQCAFVCYNRGQAQMHYRWHKNVTYQCPHCSREFKKSSTRLTHIRIKHPSCFICNLCGHSYVSENGLYCHKKLAHTAQDIEQSESVVVNPADSQYCADCNVQFMSEAAFKTHLGSSIKHATTNLSVKQPRLTKAGERRRRGRPRNGPSQIVNNGIPTATECEVCGKLLSNDVQARKHYEAEHPGAEFLKRYMCHVCGHATRQYANLMVHMRTHTDEKPYGCPHCERRFSMPSNRNRHLVVHTGEKRFQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKVRSQTDGGQTIQGASMTQNSAVKLHIQTVHLKIPYAPWDKKNRKRRKEATQGTLPDRRGTDYTGGLDDAEQRRQAAHTDLKIPYAPWDKKNRKRRKVHSQTDGGQTIQGVSMTQNSAVKLHIQTVHLKIPYAPWDKKNRKRRKSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSAVVSAACLPPPPKLLFEPQGDYLNAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -