Tacr022075.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachystola acroxantha
Gene Symbol
-
Assembly
GCA_963506565.1
Location
OY735896.1:6787842-6791490[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.41 27 6.0 0.2 2 23 186 207 185 207 0.97
2 11 0.01 0.65 11.1 0.4 3 21 237 255 236 256 0.92
3 11 0.19 12 7.1 0.5 2 23 290 312 289 312 0.94
4 11 0.12 7.5 7.8 1.2 2 23 350 371 349 371 0.95
5 11 0.00043 0.028 15.4 0.2 1 20 374 393 374 395 0.94
6 11 0.00015 0.0094 16.9 1.8 2 23 417 438 416 438 0.97
7 11 7.9e-05 0.0051 17.7 2.2 1 23 445 467 445 467 0.96
8 11 0.0082 0.52 11.4 0.4 3 23 475 495 473 495 0.95
9 11 6.6e-05 0.0043 18.0 1.2 1 23 501 523 501 523 0.99
10 11 0.004 0.26 12.4 3.9 1 23 529 551 529 551 0.94
11 11 0.0029 0.19 12.8 2.9 1 23 557 580 557 580 0.95

Sequence Information

Coding Sequence
ATGAATGCCCAGGAATGGGAATACTGCCGATTTTGTGCTGAATCAAAGCTTTTTCAGGAGCTAGTGAACCTTCCAACTGTTCCTAAAGTTCGTGAAGAGATTTACGAAAAACTAGAATATTGTGGCGttaatttaatagatttttctTCCAACAATCTTCCAGAAACTATTTGTAATACTTGCTTAACATCGTTGAATGATGCATACCAGTTTTttgctaaaataaaaatatctcaagCAGTTCTAACTAGCTTAGTTTCGTGTACTCTAAAGACCGATGTTAATTTAGAACACACGACTAATTATAGCGACGACGACTCCAATACTTTTAATGACCAAGAAATTGAATTACCTGACTCGAAAAGGAAGATTTCTcaagattttcttaaaagatCTGGAATCGTATCACGAGTGGTTTCACCGATTGATGAAAAGTTACGAAATGATTCTTGGACTGTATACCCGTGGCTATGCAAGCACTGTGGAGCCAGTCACCACAGTATAAAGGCATTGAGAGAGCACAGTTGCGATGTCCATAAGACATGCTTCGGTAACCGATGTGCGGACTGTAATATCAATGTTTCTAACTTTGAAGTATTTGTTCAGCATGTTAGAAGCCATAGACATGCTCTTAAAGATATCTGCCCGTACTGTGATATTAAGATGGAGGATGGAACCCATACCACCATTCACATTTCCCAACCCAATTGCAGCTCCTgtggacaattatttaaaactaaagtcgGACTACAAAGACATGCTAATAAATTTCAAGGTACCAGAGAAAAGAAATCTCGGAAAAGAAAGGTTTCAATACgagtaaataaaatgataacTGCAGAACAGTCATGGAAGGATTACCCGTGGACTTGTCTGCATTGTGAAAAAGTATTGCCCGATCTGAATTCCACGAGGAATCATTTGAAAGAAGTACACCGGAAATGTTTTGGTGTGAAATGCGTTGATTGTAATGATATTAATAAAAAGGCAGTCACCTTTCAGGACTTTATTGAACATGTTGTGGAACATAGGACGGGGTTAACATTATACTGTCAATATTGTGACTACCGTTCGGCAACCTACAGTGATAACATCATCCATGTACACAAGCACACTGGTCATCAATGTAAAATATGCGGAGAAATATTCAAGAATGGTACGGATCTACGCGAACATACGTCCATTTATAATCCGCGTAAACCCAGGAAATTAGTGAAGAAAATCGTTCAGATGACAATAGAAGACCTGACATGCGACATCTGTTTAAAGGTGTTTAAACATCGTACGTCGTTATTAGCTCACAAAAAAGTGCATACAGAGAGAAAAAGAGACTTTTATTGCGATAGATGCGGCAAGTCGTTCTATATGAAAGGACAATTGAAGACGCACAAGCTTCTCCACGATAGACCCGAGCCACAAATCTGTAAAATATGCGATAAATCATTTTTGACTTTAGCACGCTTGAAACTCCACTTGGATTCTCATTACGACGTGAAACGCTTTCAGTGTGACGTGTGCAAACGATTTTTCAGACTAAAAGGCATGTTGAAAGATCATTTAATAACGCATACGGATTTGATGCCGTATTCTTGCAAGTGTTGTGGTAGAAAGTTTAAATTCAAAAGTGCTTTGAAGAACCATGAGGTGGTCCATACAGGAGCCAGGCCGTTCTTTTGTCAAGAGTGTCCGTTGGCTTTTACTACTTGGGCAAATTGTAATAAGCATATGCTGCATCTACACGGCAAACCGTTTGACAAAAGCGCCAAAAGAGTGGATAGTGCCAGATGTGTAAAGTTGGGTCCGTCTGATCTATTGAATGAGGACGTTGTAGAATGGACACAAAAGATTTTGGCTAAGAAAAAACGTGGGAATGAAAAGGAATAA
Protein Sequence
MNAQEWEYCRFCAESKLFQELVNLPTVPKVREEIYEKLEYCGVNLIDFSSNNLPETICNTCLTSLNDAYQFFAKIKISQAVLTSLVSCTLKTDVNLEHTTNYSDDDSNTFNDQEIELPDSKRKISQDFLKRSGIVSRVVSPIDEKLRNDSWTVYPWLCKHCGASHHSIKALREHSCDVHKTCFGNRCADCNINVSNFEVFVQHVRSHRHALKDICPYCDIKMEDGTHTTIHISQPNCSSCGQLFKTKVGLQRHANKFQGTREKKSRKRKVSIRVNKMITAEQSWKDYPWTCLHCEKVLPDLNSTRNHLKEVHRKCFGVKCVDCNDINKKAVTFQDFIEHVVEHRTGLTLYCQYCDYRSATYSDNIIHVHKHTGHQCKICGEIFKNGTDLREHTSIYNPRKPRKLVKKIVQMTIEDLTCDICLKVFKHRTSLLAHKKVHTERKRDFYCDRCGKSFYMKGQLKTHKLLHDRPEPQICKICDKSFLTLARLKLHLDSHYDVKRFQCDVCKRFFRLKGMLKDHLITHTDLMPYSCKCCGRKFKFKSALKNHEVVHTGARPFFCQECPLAFTTWANCNKHMLHLHGKPFDKSAKRVDSARCVKLGPSDLLNEDVVEWTQKILAKKKRGNEKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-