Basic Information

Insect: Tachystola acroxantha
Gene Symbol: erm
Assembly: GCA_963506565.1
Location: OY735893.1:196206-197303[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.2e-06 0.00047 21.0 0.4 1 20 141 160 141 163 0.92

2 6 3.8e-07 2.4e-05 25.0 1.6 1 23 169 191 169 191 0.97

3 6 1.5e-06 9.7e-05 23.1 2.2 1 23 197 219 197 219 0.98

4 6 1.5e-05 0.00099 20.0 3.2 1 23 225 247 225 247 0.98

5 6 0.001 0.065 14.3 5.9 1 23 253 275 253 275 0.99

6 6 2e-05 0.0013 19.6 4.5 1 23 281 304 281 304 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.2e-06	0.00047	21.0	0.4	1	20	141	160	141	163	0.92
2	6	3.8e-07	2.4e-05	25.0	1.6	1	23	169	191	169	191	0.97
3	6	1.5e-06	9.7e-05	23.1	2.2	1	23	197	219	197	219	0.98
4	6	1.5e-05	0.00099	20.0	3.2	1	23	225	247	225	247	0.98
5	6	0.001	0.065	14.3	5.9	1	23	253	275	253	275	0.99
6	6	2e-05	0.0013	19.6	4.5	1	23	281	304	281	304	0.98

Sequence Information

Coding Sequence: ATGCAGCCGTTCCAGTCGGGCGTGCGGCCCGAGGGCCCGCGCGAGTCCTCGCCCGAACGCGCCAAGTCACCTGACACGCCAGCACCACCAGTCCTCAACTTCTCCATCGCCAGGCTCATGGAGCCAGACAGAAAGAAGTCCACATCACCGGAACCTCCTAGCTTCCTCTCGTACGGAGCTCATCTCCTCGACTCAGCCTTCAAACAGTACATTCCAGCTGCCAGAAGACAGCTAGTCTCCCACTACCCCTTGCTGTACTACGGGCCAGATCTCGTGTCGCTGACTTACGCGCATCAGATGCTGCCTAGACCTCCGCCTGCGCCGTCTCCTGTCCAAAGACCTGCGAGTCCTAGGCCCCCGGCTGTGGATACGGTCTCGTCTACAACAGGGCCTACTCCGTCGCCAGCGAAGAACAAAAGTTTCGCTTGCGGCGACTGCGGGAAAGTCTTCAATGCACATTATAATTTGACGAGGCATATGCCGGTTCACACCGGTGCCAGACCCTTTGTGTGTAAGATTTGTGGGAAAGGATTCCGGCAGGCTTCAACTTTGTGTCGGCACAAGATTATTCACACGTCAGAGAAACCGCACAAGTGTATGACGTGCGGGAAAGCATTCAATCGCTCGTCAACTCTGAATACCCATGCTCGGATTCACGCCGGGTACAAGCCCTTTGTCTGCGAGTTCTGCGGGAAGGGCTTCCATCAGAAGGGCAACTACAAGAACCATAGGTTGACGCACAGCGGGGAGAAGGCGTACAAGTGTTCCATCTGCAACAAGGCGTTTCACCAGGTCTACAATCTTACATTCCACATGCACACTCATAACGAAAGAAAGCCGTTTACTTGCAACATTTGCGCCAAGGGTTTCTGCAGAAATTTCGACCTCAAAAAGCATACAAGGAAGTTGCATTTAGGAGTCGGATCGAATAATGACTCCTCTTTAGACACTCAGGATGAATCTACTCAGGAGGCAACTTCTAGTCCAGTGGAGGAAGCCCGGGTGGCCTTCAGGCCGTTCCTGAGCTCCTCGTACCCTCGGATCCTGGACCCCGCCAGGATGACGGCTCCTAACGCGTTTTTCTCCAAGCTTTTGTGA
Protein Sequence: MQPFQSGVRPEGPRESSPERAKSPDTPAPPVLNFSIARLMEPDRKKSTSPEPPSFLSYGAHLLDSAFKQYIPAARRQLVSHYPLLYYGPDLVSLTYAHQMLPRPPPAPSPVQRPASPRPPAVDTVSSTTGPTPSPAKNKSFACGDCGKVFNAHYNLTRHMPVHTGARPFVCKICGKGFRQASTLCRHKIIHTSEKPHKCMTCGKAFNRSSTLNTHARIHAGYKPFVCEFCGKGFHQKGNYKNHRLTHSGEKAYKCSICNKAFHQVYNLTFHMHTHNERKPFTCNICAKGFCRNFDLKKHTRKLHLGVGSNNDSSLDTQDESTQEATSSPVEEARVAFRPFLSSSYPRILDPARMTAPNAFFSKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785466;
90% Identity: iTF_00027162;
80% Identity: -