Tacr022691.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2809193-2813907[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0022 0.14 13.2 2.7 1 19 79 97 79 102 0.93 2 13 4.1 2.6e+02 2.9 1.2 2 23 128 150 127 150 0.92 3 13 0.001 0.066 14.2 0.2 2 23 173 194 172 194 0.97 4 13 0.0016 0.1 13.6 0.5 1 23 198 220 198 220 0.98 5 13 2.4e-06 0.00015 22.5 2.3 1 23 225 248 225 248 0.98 6 13 3.6 2.3e+02 3.1 0.2 2 20 256 274 255 278 0.79 7 13 1.3e-05 0.00083 20.2 4.4 1 23 285 308 285 308 0.98 8 13 0.00034 0.022 15.8 5.5 1 23 314 337 314 337 0.97 9 13 3.4e-05 0.0022 18.9 0.2 1 23 349 371 349 371 0.98 10 13 0.049 3.2 8.9 0.1 1 23 465 488 465 488 0.91 11 13 0.34 22 6.3 0.6 3 23 518 539 517 539 0.97 12 13 1 64 4.8 0.3 3 23 564 584 562 584 0.96 13 13 0.033 2.1 9.5 0.2 1 23 588 611 588 611 0.95
Sequence Information
- Coding Sequence
- ATGACTGTTTTGAATTTCCCTAACAATTTTTGGTGGAATAAAGTTGTAACTGTACAGACCCCATTTGGCGGTGGACGTGTCGGAAGATCTAAGAAAATCAAGATCGAAACACCGATACCCAACCAAGTAAAGCGATCTCTCGAATCCACTGAGAAAGAGAAGAATCTACAAAACCTGAAGCAGATTTTACTGAGCTCCAACGCGAACACAATCAAATATATAGACTCCAAAGGATACAATTGCGGTTTCTGTCCCAAGAAATTTCGTTTGCCATCGGACCTTAAAAAACACTGTCTCGAAGATCATACTAGTAACGACATTAAACGCATGACCAGTCAACTGTTTAAGAAAAACGCCCCGAAATTAGATATCACCGATTTATGTTGCACACTTTGTAACAACAGCATTGATAGTTATAAAGATTTTATAGATCACCTAAAAGATGAACATGGCAAAACTATACACGTTGGGATCAAAAACTTTATACTGCCGTTCAAATTCGATTCGGATTCACTGAGATGCGCGGTGTGCCCGCTTGCATTCAGAACATTCAAGCTAGTTCAAGAACATATGAACACACATTACAGGAATTATGTTTGTGCTAAATGCCCTTCTGGATTTGTCGCAAAGCACCTCCTTACTAATCACATGTTAAGACATCAAATTGGAGAGTTCAAATGCAATCGGTGCGATAAAACGTTCTCTAATAAGGAAAGCCGCCGCGCACACATAAGGAGGGTGCACTTAGGGTTGACTAAAACTAataaatgcacattttgcgaggAGAAATTCTATGATTACTGGGTTAAGATCGATCATATGGTGGAAGCTCATGGGGTTCCTAGGATGGAGTTTAAATGCCAGGATTGCGAGAGGTCTTTTAAGACTCAGAGGGCTCTGTCtcaccacacgagaaaagatcaTATGTTGCAGAAGAATCACAAGTGCAGCGAATGCGATATGCAGTTTTTTAGGTCGAGTTGCTTGCGTGCTCATATTATGAGGAAGCATACTGTGATTCAATCGCAGTTGCAGTTGCAAGAGTTCCAATGTGACGTATGTTTCAAGGCTTTTGGAAGGAAGGCTACGTTGGAGGAACATGTAAAGATACACGCGGAGGACAGAGGATTATCTTGTTCGCTACGCTCAAGCAACTTTTCAAAAGACGATGAACCTGACCAAATTAAACTGAAGAAACACGTCAACTTCTCCTCATTCATCGCTATCAAACCTGCGAAGAAAAAGGTAGCAGAGAAAAGGAGACCTAGAAATCAGAACCAGAGCTCAGAACCTAAGTTAAGGATTGCAGAACTTGATTGGCAAATCGAGAATGCTAAGAGTATTCTGCGTTGCTCGAATGCAACTCCCATTCGCTGCTACGTCAGCTCCAGATACGCATGCAGCTACTGTCTTGATCAGTTCTCAGATCCGATCGAATTACGAAAACATACAATAGATGCTCACATAGACGACGATAGTCAAAGACCTGAATTCGTGAACATTCGCTCATTATCACGATACATTGTGTATATGGATATTACAGATTTGCTATGCAAACTTTGTGACGAGAAGATTCATACGATTGACGATTTAATGGATCATTTGATGAAAGAACACGACGAGCCTATCCATGTGGAGATTAATAAACATGTGATTCCATTTAAGTTTGAGAAAGATAAGGAATTGGCTTGTGTGATATGTTCAGAGGAACTGGAAGATTTCACGTCGCTTCATGACCATACGCTGACGCATTATAAGAATTATCGGTGCGAGTTTTGTGAAGGTGGCTTCGTGAATCGTTCCATGATGATCGTCCACAAGAAGGCGGTCCATAATGTGCTTCAAAAGATTAAATACAGAAGGAATgtttag
- Protein Sequence
- MTVLNFPNNFWWNKVVTVQTPFGGGRVGRSKKIKIETPIPNQVKRSLESTEKEKNLQNLKQILLSSNANTIKYIDSKGYNCGFCPKKFRLPSDLKKHCLEDHTSNDIKRMTSQLFKKNAPKLDITDLCCTLCNNSIDSYKDFIDHLKDEHGKTIHVGIKNFILPFKFDSDSLRCAVCPLAFRTFKLVQEHMNTHYRNYVCAKCPSGFVAKHLLTNHMLRHQIGEFKCNRCDKTFSNKESRRAHIRRVHLGLTKTNKCTFCEEKFYDYWVKIDHMVEAHGVPRMEFKCQDCERSFKTQRALSHHTRKDHMLQKNHKCSECDMQFFRSSCLRAHIMRKHTVIQSQLQLQEFQCDVCFKAFGRKATLEEHVKIHAEDRGLSCSLRSSNFSKDDEPDQIKLKKHVNFSSFIAIKPAKKKVAEKRRPRNQNQSSEPKLRIAELDWQIENAKSILRCSNATPIRCYVSSRYACSYCLDQFSDPIELRKHTIDAHIDDDSQRPEFVNIRSLSRYIVYMDITDLLCKLCDEKIHTIDDLMDHLMKEHDEPIHVEINKHVIPFKFEKDKELACVICSEELEDFTSLHDHTLTHYKNYRCEFCEGGFVNRSMMIVHKKAVHNVLQKIKYRRNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -