Tacr020578.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735893.1:8466625-8488404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.061 3.9 8.7 0.0 1 23 168 190 168 190 0.98 2 12 0.57 37 5.6 1.0 1 23 197 219 197 219 0.97 3 12 0.57 37 5.6 1.0 1 23 259 281 259 281 0.97 4 12 8.7e-06 0.00056 20.8 0.8 1 23 313 335 313 336 0.95 5 12 0.21 14 7.0 2.7 1 23 342 364 342 364 0.84 6 12 4.6e-05 0.003 18.5 0.4 1 23 375 398 375 398 0.96 7 12 3.6e-05 0.0023 18.8 0.1 3 23 404 425 403 425 0.97 8 12 0.0002 0.013 16.5 1.2 2 23 436 458 435 458 0.96 9 12 0.0019 0.12 13.4 0.4 2 23 466 488 465 488 0.95 10 12 0.041 2.7 9.2 0.0 6 23 499 517 498 517 0.94 11 12 4.6e-05 0.0029 18.5 4.5 1 23 526 548 526 548 0.98 12 12 3e-05 0.0019 19.1 0.5 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAAAACAAAACCTTTACAGCAAATGTATCAATAAAAGTAGAACCTTTCTATGAGGATACTGATAATAATCCAGATGATGAATGTGGGAATATGACTGAAGACCCGGAGACCAGTTGCCAAGGGATTAGACCATTTGAAAATGTCTTGGTGAAGGCTGAGCCTCCGTTTTATGACAGTGGTGAAGAAATCAACCTTCCTTTATCACCACCGGCATTGCCTCCGACTCCAGTGTTTCTGATCAAGAGAGGCAACAAGAGGAAATCCAAAAAGAATTCTGACGATGAAGACGAAGAATATCTTCCGTATAAGGCAGATCATTCAAAGAAGAAAGAGAAAGGAGAATTCAATTATAAACCCGcatataaattgaaaaaaaTGAAACGCGAACAAACCTACTCAGAAGACATATTAAAATCGATACAAATTGTACAAATATCAGAGGAAGAGAGACAGGTAGAGCATAGAGAAACTCTGAAGAGACGCAGCCGCTTCAAGTTCGTATGTACAATGTGTGCCGTAGGTTTTGTGCTGGAAGACGCGTATTTGGCTCACATGATGATACATTTGCCAATCTCAGGCGATCACGAATGTGACGTATGCAACTCGCGGCTAAAGGCCGCCGAGACCTTATACACTCACCGACTGCGCCACTTCAGACGCTACCGGTGTATGACTTGCAACTGCATGTTTAAGGACAAGGATAAGTGCGCGTGCCATGTCATGAATGTCCACGCGAGACAGGCGTTTGTGTGCGCGGACTGCGGTGACCACGAATGTGACGTATGCAACTCGCGACTAAAGGCCGCCGAGACCTTATACACCCACCGACTGCGCCACTTCAGACGGTACCGATGTATGACTTGCAACAGCATGTTTAAGGACAAGGACAAGTGCGCGTGCCATGTCATGAATGTCCACACGAGACAGGCGTTTGTGTGCGCAGACTGCGGTAAGGCGTTCAAACGCCCGCAGTATTTAAGAGGCCATATATACCAGCACCACACCAAGGAAAAGTCGTTTGAGTGTCCCATCTGTGAGAAAGTTTTCCACGAGCGCGGAAGATGGCGCTGCCATGTCAGAAATCACAACGACGAGATTCGTCCACAAGTCGGTGTGTTCGCGTGTGGTCTGTGTGGCAAGAAGCTGCGTAGCAAGGCGTACCTCACGCGCCACCTGGCAACCACGCATAGGGACAACTCGGCATGCGACCTATGCGGCGCTCCGTTCAGGAACGCAGACATGCTATCTACGCATATGCGGAGGGCGCATGGGGCGAGTAAAGACGACAGTGGGAGTCAGTCGTGTCCGCACTGCCCACGCGTGCTCACCACGCGGGGCATGCTGTCTCGACACGTGAAGAGAATGCATATGGACAGGACGAAATCAATCCAATGCGATTACTGCAAACGCTTCTACTACTCTAAAGGCGAGGTTCGTTCTCACATCATGTGGTCGCACatgcgcgcgcgcggcggccaCGCGTGCGCGTGCGGCCGCGTGTTCCGCACGCCGGCGCGCCTGCGCGAGCACGCCGCGCGCCTGCACGCGCCCGGACCGCCGCCCAGGGCGCACGAGTGCAAACACTGCGGGAAGCGATTCGGGAACAGACAAGTTCTCACACGTCACTTGAAAGTCCATACTGACGAAGTGTTCCCTTGCAACGAATGTGGTGTCACCTTCAAGACCCAGGGCTACGTCAAAATACACTACAAAGTGAAACATCTCAACATGACCAGAGCACAAATTAAAGCCGAGAGTAAACGAAAAAAACCAATTACAATAGAAAAAGGGATGATTTTGAAAAACATAGCGTCTAGTTTTGTGAATCGTAGTAATTTGAACATAACGGTTAAAGAGGAAAATatgaaaatacctacatttgaaACTTTTGTCGATGTACAGAAGTAA
- Protein Sequence
- MQENKTFTANVSIKVEPFYEDTDNNPDDECGNMTEDPETSCQGIRPFENVLVKAEPPFYDSGEEINLPLSPPALPPTPVFLIKRGNKRKSKKNSDDEDEEYLPYKADHSKKKEKGEFNYKPAYKLKKMKREQTYSEDILKSIQIVQISEEERQVEHRETLKRRSRFKFVCTMCAVGFVLEDAYLAHMMIHLPISGDHECDVCNSRLKAAETLYTHRLRHFRRYRCMTCNCMFKDKDKCACHVMNVHARQAFVCADCGDHECDVCNSRLKAAETLYTHRLRHFRRYRCMTCNSMFKDKDKCACHVMNVHTRQAFVCADCGKAFKRPQYLRGHIYQHHTKEKSFECPICEKVFHERGRWRCHVRNHNDEIRPQVGVFACGLCGKKLRSKAYLTRHLATTHRDNSACDLCGAPFRNADMLSTHMRRAHGASKDDSGSQSCPHCPRVLTTRGMLSRHVKRMHMDRTKSIQCDYCKRFYYSKGEVRSHIMWSHMRARGGHACACGRVFRTPARLREHAARLHAPGPPPRAHECKHCGKRFGNRQVLTRHLKVHTDEVFPCNECGVTFKTQGYVKIHYKVKHLNMTRAQIKAESKRKKPITIEKGMILKNIASSFVNRSNLNITVKEENMKIPTFETFVDVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -