Tacr022069.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735896.1:6749660-6756098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.06 3.8 8.7 0.9 2 23 272 294 271 294 0.91 2 13 0.05 3.2 8.9 0.3 1 23 300 322 300 322 0.96 3 13 7.5 4.8e+02 2.1 3.2 1 23 328 350 328 350 0.92 4 13 5.7 3.6e+02 2.5 0.3 3 21 358 376 357 377 0.92 5 13 0.00016 0.01 16.8 0.0 2 23 421 443 420 443 0.96 6 13 0.0046 0.3 12.2 1.4 1 23 477 499 477 499 0.96 7 13 0.0014 0.089 13.8 0.0 3 21 507 525 506 526 0.94 8 13 0.0023 0.15 13.2 1.4 2 23 542 563 541 563 0.97 9 13 9.2e-05 0.0059 17.5 0.0 2 23 572 593 572 593 0.96 10 13 9.1e-06 0.00059 20.7 2.1 2 23 600 621 600 621 0.97 11 13 0.0085 0.55 11.3 3.5 1 23 627 649 627 649 0.95 12 13 8.4e-05 0.0054 17.7 4.5 1 23 655 677 655 677 0.98 13 13 9.2e-05 0.0059 17.5 3.1 1 23 683 706 683 706 0.97
Sequence Information
- Coding Sequence
- ATGGAATCACGATATCTAATACCCTACAATATATTACAAAATGATTCGCATATTAAAATACCGAGTCACTGTCGATTTTGCGCTAAAGAGAGTAAATTTGAGATTTTACTAGACTTATCTCAGAACGAGGAGGCTTTGATGGACTATTTAAAAATGATGGAATTCTTAAAAATAGATTTTCTGGACTTCTCTAATATGCATTTACCTAAAACTTCATGTGAGGCATGCTACAGATCTTTGAAATCGGCATATAATTTCATTGGTATGGTAAAACAGTCTCAATTTCAAATAAATAGATTGTATCTGGAATATAATCCtattgatataaaaatagaactgGAAACTGTTATTAAACATGAACCGACGGAAGAAGAACTTGTAACTAAACCTATATTCGCTGCAGAAACTGCATTTGTGAATTGTATGCCACCGAATAATATTAAACAGGGTGTCGAACCATCTGTAAGTCCTGAGCTGACCCATGAAGATACTTCAGACTCTGAGCTCGACTCCGTTGCCATCGACACTCAGACTTACAGCGGAATATCAGTCTTCCAAGACCTAAAATCAACAACTAAAAGTCCTTTACAAAAAAGTTCAACAATTACAAGTACATTACAAGGTCTAGAACATAACTTAGTACCTGAAACTGAATCAAATTTTGTTATAACTAATGTTGAGTCATCGTCTTCATCAGAGGAACTTGAGTCCGCTGTCAAAGACCTTTCTCCTCTGTACTGTGGTTTCTCAGTCTTCGAATCTGATGTCCAGGATGACCGTAAAGAAACTGATTCGTGGATGAGTTATCCGTGGTCCTGTAAGCATTGTAACTTGGAGTTCGACACTATGTCCGAGGTTCGAGACCATAGTAAGGCCTTGCATGACATGTGCTACggttttgattgtgttgactgCGATGAACAGTTTAATATGTTTAATTCATTTGTTGAACATGTGAGGCTGCATAGAGATGTTTTGAGATATTACTGTCAATACTGTAACGATAAGTTCGAGACACGCTTAGATTGCGAGAAGCACGCACTGTCTCACTGGGAAGGCTCGCAGAAGATTTGCGACCGCTGCGGCCAAATATGTCTCGACGCTAAGACTCTGGAAAGTCATAAGCGGGCTTATAAACAGTTTACTTTGCCGAGGAATTATTACAGgAAGAGACCTAAACAAGTTGCGCCGGCATTTCAATACAATGGAATCCCAGTGTTCCAACAGGCTGAAGTGAGGAGTTGGAAGGAATACGAGTGGATGTGCCAGGATTGTGGCATCAGAGCTTCAGATGCGGACAGTTTGCGAGCCCACATTCGCAGCTTTCACAACAAATGTTTCGCTATGAAATGCGCGGACTGTCTCAAGGTCGTCCGGAATTATTTCATGTTTGTCCCGCATGTGACTGGACACAGGCCTTATTTGAAACACTATTGCCAATACTGCAACCTTCAATTCGATGACTTAACCGACTTATCCAACCATGTCAACGAACATCTGACCGGCGATCAGAGACCATGCGATGGCTGCGGACAGATATTCGAAAACAACACTCAATTGGTACAACATTTGAAGCAGTACGACCCTCCAAGACGAAAGGGGAACATCACAACAGAAGAACTAACTTGCGATGTGTGTTCTACATTGTTTAAGACGTTAGGGCGCTTGAGATCTCATCGAAGAACCCACAATGAGAACAGAAAGAGGGATAACGTTTGTGATACTTGTGGCAAAGGCTTTTACAACCCAAGTATGCTTGCCGCTCATGCCTTAATTCACAGTACAGTTAAGGCAGAAGTCTGCCAGATATGCAAAAAAGAATTCACGACCAAACAACAGCTAAGATCTCACGTAAAAACTCATTTGGAAGCTAAACTTTTCACTTGCGACGAATGTGGCAAGAATTATAGAACTAAAAATCGTTTGAAATGTCACATTGTAAGCCATAGCGACGTGAAACAGTTCAAATGTATggtttgtgaaaaacagtttaattataaGACTAATCTTAAGACTCATATGCACATACATACCGGTTTTAGACCCTATTCTTGTGAACAATGTGAGAAAACATTCACGAATTGGGCTAATTGTAACAAACATATGATAAGGAAACATGGGGTGACGATAGCTAAGACTAAATTGACGCCGCAAGGAAGGGTGGAAATTAATAAAGTAACGGGTAAAGCGAAAAAACTGGCATCGGATACGAAAGCTAAGGAATGGATGAGTCAAATGATTAAACCTGCTAGAAGAGGGAAGAAAACTGCGAAGGAGAATTAA
- Protein Sequence
- MESRYLIPYNILQNDSHIKIPSHCRFCAKESKFEILLDLSQNEEALMDYLKMMEFLKIDFLDFSNMHLPKTSCEACYRSLKSAYNFIGMVKQSQFQINRLYLEYNPIDIKIELETVIKHEPTEEELVTKPIFAAETAFVNCMPPNNIKQGVEPSVSPELTHEDTSDSELDSVAIDTQTYSGISVFQDLKSTTKSPLQKSSTITSTLQGLEHNLVPETESNFVITNVESSSSSEELESAVKDLSPLYCGFSVFESDVQDDRKETDSWMSYPWSCKHCNLEFDTMSEVRDHSKALHDMCYGFDCVDCDEQFNMFNSFVEHVRLHRDVLRYYCQYCNDKFETRLDCEKHALSHWEGSQKICDRCGQICLDAKTLESHKRAYKQFTLPRNYYRKRPKQVAPAFQYNGIPVFQQAEVRSWKEYEWMCQDCGIRASDADSLRAHIRSFHNKCFAMKCADCLKVVRNYFMFVPHVTGHRPYLKHYCQYCNLQFDDLTDLSNHVNEHLTGDQRPCDGCGQIFENNTQLVQHLKQYDPPRRKGNITTEELTCDVCSTLFKTLGRLRSHRRTHNENRKRDNVCDTCGKGFYNPSMLAAHALIHSTVKAEVCQICKKEFTTKQQLRSHVKTHLEAKLFTCDECGKNYRTKNRLKCHIVSHSDVKQFKCMVCEKQFNYKTNLKTHMHIHTGFRPYSCEQCEKTFTNWANCNKHMIRKHGVTIAKTKLTPQGRVEINKVTGKAKKLASDTKAKEWMSQMIKPARRGKKTAKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -