Tacr022701.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2848270-2850735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 1.2e+02 4.0 0.7 1 23 60 83 60 83 0.92 2 15 0.0053 0.34 12.0 0.3 2 20 154 172 154 175 0.94 3 15 0.0034 0.22 12.6 0.6 1 23 179 201 179 201 0.96 4 15 0.069 4.5 8.5 0.4 2 20 404 422 404 425 0.92 5 15 0.0017 0.11 13.5 1.3 1 23 429 451 429 451 0.97 6 15 0.71 46 5.3 0.7 1 23 503 526 503 526 0.90 7 15 0.34 22 6.3 0.1 2 23 553 575 552 575 0.90 8 15 0.013 0.87 10.7 0.7 2 23 598 619 597 619 0.95 9 15 0.0044 0.28 12.2 0.0 1 23 623 645 623 645 0.96 10 15 0.00018 0.011 16.6 3.6 1 23 650 673 650 673 0.96 11 15 0.024 1.5 9.9 0.4 2 23 680 702 679 702 0.95 12 15 0.00079 0.051 14.6 4.8 1 23 709 732 709 732 0.98 13 15 1.6e-05 0.001 19.9 5.6 1 23 738 760 738 760 0.98 14 15 2.1e-05 0.0014 19.5 2.4 1 23 766 788 766 788 0.99 15 15 6.1e-05 0.0039 18.1 4.6 1 23 794 817 794 817 0.98
Sequence Information
- Coding Sequence
- ATGGTAATTAAACAGTCTGTATCGGTGACTAAAAATCGGTCCTCTAGAAGGGAAATATTCACTATCTGTACTAAAGAACGCAAAGGAAAAGATATTACGAAGCACTTGCAGAATATACGTATGATTCTGTTACATTCTAACGCGACTCCAATAAAACGTCACAGTGACGCCGCCGGCTATGCTTGCTGTTTCTGTAATGAACAAATGCCTAGTGCAGCCGATCTGAAGACACACACTCTGGAGAAACATGATGATTCAACTAAACGCACGTTTATGGAAAACTCTTTAATGTTTACATACGTAGTCAAACTAGATGTAACCTCGTTACAGTGTAATATTTGTTTCGACAATATCGAGGCGTTGGAGCAACTGATTGGACATCTACAATCACATGACAAGAAAATGTACACCGATATAAACAATCATATACTCCCATTTAAGTTTGTTAACGAAATTCCGACTTGTGCAGTATGCTCGAAAACGTTCTCAGTTCTAAAAACATTACAAGAGCACATGCCTTTGCACTACGGTAACTATATCTGCGACGTCTGCGAATCCGGTTTTATTACTAAACACGCTCTTCAAAAGCATTCCGCTAGACACAAACGAGGTGAACTCAAAATCGATACAAAATACGAACTCGACAGAGAAACGACTAAAGTCGTTAAAGTAGAATCAGAAGTAAGTGAAACTTCTACTAAAGGTAGACACCAAGAATCTTCTATAGCTTCAAAAAATAAGAGAAATACCTcacaaaaagtaattaaacagTCTGTATCAGTGACTATAAATCGAAATTCTAGAATGAAAACATTTAGTATCAATACTGAAGAAAGTAAAGATATTACGAAGCACTTGCAGAATATACGGATGATTCTGTTACATTCTAACGCGACTCCAATTAAACGTCACAGTGACGCCGCCGGCTATGCTTGTTGTTTCTGTAATGAACAAATGCCTGGTGCAGCCGATCTGAAGACACACACTCTGGAGAAACATGATGATTCGACTAAACGCACGTTTATGGAAAAAAGCTTAATGTTTACATACGTAGTCAAACTGGATGTAACCTCGTTACAGTGTAATATCTGTTTAAACAATATCGACGGGTTGGAGCAACTGATTGGACATCTAAAATCACATGACAAGAAAATGTACACCGATATAAACAATCATATACTCCCATTCAAGTTTGTTAATGAAATTCCGACTTGTGCAGTATGCTCTATAACGTTCGAAACTCTAAAAACATTACACGAGCACATGCCTGTGCACTACAGTAACTATATCTGCGACATCTGCGAATCAGGTTTTATTACTAAACACACGTTTCAAAAGCATATCGGTAGACACAGACGAGGTGAATTGAAAATCAATACAAAAAACAAACTCGACAAATCGAAGGATATTAGGTGTATACCAGAACTAAATAAGCATAGGTATAATATTCGAACTGTACTGCGTTGGTCGAATGCAACGCCGATCCGGAAACGCGGTGGCATCGGTTACGCGTGCTGCTTCTGCACAGACCAGTACCCAGACCCCGCTGACCTCAAGCGGCACACAATAGACCGACACGGTGATGACGTCAAAATAACTTTTATGAAAAAAGATTTGATGTACTCTTATGCAGTCAAACTTGACATCACTTTCCTGAACTGTAAGATATGTGGAAATTCTATAGACACACTCGAAGAATTTACGGAACATCTGGTAAATGTACACAATAAAGAGTATTTCACTGATATAAACAACCACATTATGCCGTTTAAGTTCGAAGGTGACGAGTTACGTTGTGTGATGTGTCCAATGAGGTTCACCAAGTTCAAACTTTTACAAGAACACACTAATGGGCATTATAGGAACTACATTTGCGCCGGTTGTGGTGCCGGATTCATCAATAAGCAATCGCTTGCAGTTCACTCCGAATCCCATAAAACAGGCAATTTCAAATGCGAGTTTTGTGAGAAAACCTGCAAGTCTAAGACATATTTGAAGGCCCATATATTGAATGTTCACATGCACCGAAAGTATAATAAATGTGCGTACTGCGATGAGGCATTCGCTAATTATCGTGCCAGAGAGGCACATTTGCATCGGATACACGGGATTCGCATATCGACTTATAAGTGTCAGAGATGTTACAAAAGGTGTTCAAATTCACGTATGTTACGGGATCATATGCAAATGGTTCATATTTTAGAGAAAAGTCATAAATGCGCAGAATGCGATATGTCATTTTATAAAAAACATAACCTTACTATTCATATGCGGAAACACACTGGTGAGCGGAATTTTAAGTGTGAAGTGTGTCACAAGGCTTATGGAAAAAAGAATACGTTAAGAGAGCACATGCGTATACATTTAGATGATCGTCGATTTAAGTGTGAACACTGCGGGCAAGCGTTCGTGCAGAAGTGTAGTTTGAAGGGGCACTTACGTTCTAAACACGGCGAATTGTTGTAG
- Protein Sequence
- MVIKQSVSVTKNRSSRREIFTICTKERKGKDITKHLQNIRMILLHSNATPIKRHSDAAGYACCFCNEQMPSAADLKTHTLEKHDDSTKRTFMENSLMFTYVVKLDVTSLQCNICFDNIEALEQLIGHLQSHDKKMYTDINNHILPFKFVNEIPTCAVCSKTFSVLKTLQEHMPLHYGNYICDVCESGFITKHALQKHSARHKRGELKIDTKYELDRETTKVVKVESEVSETSTKGRHQESSIASKNKRNTSQKVIKQSVSVTINRNSRMKTFSINTEESKDITKHLQNIRMILLHSNATPIKRHSDAAGYACCFCNEQMPGAADLKTHTLEKHDDSTKRTFMEKSLMFTYVVKLDVTSLQCNICLNNIDGLEQLIGHLKSHDKKMYTDINNHILPFKFVNEIPTCAVCSITFETLKTLHEHMPVHYSNYICDICESGFITKHTFQKHIGRHRRGELKINTKNKLDKSKDIRCIPELNKHRYNIRTVLRWSNATPIRKRGGIGYACCFCTDQYPDPADLKRHTIDRHGDDVKITFMKKDLMYSYAVKLDITFLNCKICGNSIDTLEEFTEHLVNVHNKEYFTDINNHIMPFKFEGDELRCVMCPMRFTKFKLLQEHTNGHYRNYICAGCGAGFINKQSLAVHSESHKTGNFKCEFCEKTCKSKTYLKAHILNVHMHRKYNKCAYCDEAFANYRAREAHLHRIHGIRISTYKCQRCYKRCSNSRMLRDHMQMVHILEKSHKCAECDMSFYKKHNLTIHMRKHTGERNFKCEVCHKAYGKKNTLREHMRIHLDDRRFKCEHCGQAFVQKCSLKGHLRSKHGELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -