Tacr019727.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735892.1:3391876-3394539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 9.1 7.5 0.7 5 23 349 367 348 367 0.96 2 12 0.1 6.8 7.9 0.1 3 23 375 395 373 395 0.88 3 12 6.5 4.2e+02 2.3 0.7 2 23 403 424 402 424 0.84 4 12 1.2e-05 0.00075 20.4 1.8 2 23 430 451 430 451 0.98 5 12 9.6e-05 0.0062 17.5 2.2 1 23 457 479 457 479 0.98 6 12 0.035 2.3 9.4 0.0 2 20 484 502 483 504 0.88 7 12 0.0002 0.013 16.5 0.3 1 23 537 559 537 560 0.94 8 12 0.0031 0.2 12.7 0.0 3 23 569 589 568 589 0.98 9 12 0.00024 0.015 16.2 0.3 1 23 600 622 600 622 0.98 10 12 6.6e-05 0.0043 18.0 3.7 1 23 628 650 628 650 0.98 11 12 0.0033 0.21 12.6 0.3 3 23 658 678 656 678 0.98 12 12 7.1e-05 0.0046 17.9 1.1 1 23 684 707 684 707 0.96
Sequence Information
- Coding Sequence
- ATGGATTCGGATCCGTGGTCCAACCTATGTCGAAGCTGTCTGTCGCCAAATTCCGAAGTGTCACTGCTGGATGCAGAACTTGATGTGAAAACGAAGTTCGTCGAAGTTACTACTGTTGAGGTAGCAGACGACGACGGATTGCCACAAAAACTGTGCGGTGAATGCTATTCCAAAATGAATTCTGCATTTGAGTTTCGAAAGCAATGTATTAAAATGAATACTGAATTGAAAATTCAACAGGAGACCTTGATAAGGCAAAATAAGGAGTATGAGACGACAAAAATGGTATCACATAATGATGATACTGCTAATGTCATGACTGAACTGTTATCAATCATCAAACAAGAACCAACTGACAGTGATGATGACTGTTATTATGTACTGGTCATTGATGACCCAAAAGATAGTGATCAGGAGGTGAAAAAAATTGTTAAAGAGGAACATATTAAACAGGAATGTGATAATTCAGTAGACTTGACACTACAACATGATGAGAGTGAAGACAGCGCGACTCGTAAAGTATTGGAACAGAAATACGATACATACATAGACACTACTAAAGTCCCAGCCAATGTGCCAGCCACTATCCTCGAAAACGAAGAAAGTCCAGATATTGAGGAAGACAATGATGTAATGGATATTGACGATACCTATATGGAAGATAGCGTCTCACAGGAACAACATTTAACTCAAAACGAAGACTCTGAGGAGCAAAATTTGGAATTGGAAATATCAGGAAATATTGATGAACCACCAAATAAGAAGAACTTCTTTAAAATAATCACCACCAATGGTAAAGACGGCACTATAGTGTTCAATGGAGATGACGGAATCCAATACTTGACAGAATCGCAACTAGTTACGCACAAGGATGATGACGGTAACCTAATTAATCAGGAAGAGGTGATATTCTGTGAAGGAGAAGATTCGGCACAGTTTCAAGTTCTGAAATGTGATGGCTCAGAGCTCATCATAGAATATGCTGGTGAGGAGGGTGATCAGATAGCTACAGTACTGCAGCAAGAAGATGGAACTTACATATGCGATTGTGGAATGGAATTTGAAGATTTGACTGAGTATGAGAAGCATCAACATCAGCACAATCCAGCGGGAGACCATTTGTGTAATCTGTGTGGTAAAGGATTCGAATCAGCGGAGATTTTATCTGGCCATATGGTCCTACACACCGTTACAGGCACGCTAGTCACATGTCCGTTTTGCAAACAGCTTATAAGGAGAAATGGCTTGACACAGCATATCAAATTCAGCCACAATAACTTAAAACCGCAGTGCAGTTCTTGTTCCAAAACATTTGCCAATACGAACAATCTTAAACGTCACATGATGATTCATTCTGGAGTGAGAGATTTTGAATGTGACATATGTTTCAAACGTTTTTCGCAAAAGATCACGATGCAAACGCACAGGCTTACTCACATAGATCCGTTTGCGTGCATCGAGTGTGACGAAACTTTCGAGAACCAATCCGGCTTGATGGATCATAAGTCGGGTGATGCATGTACGAAGTCAAAAGTGAAGCGAGTGAAACAAGAATTGATGAAGACAGTAAAACAGGAAGTTACGACGAATCTAGGAAAACTTCTGGGTTACGCTTGCTCACTTTGCAAGAAGATGTTTTCAGTTGAGTCCGCTTTAGAGCTTCATATTGAGGGTCATCATATGATAGATCCGTCAGATTTGCTGTGTTCCGAATGTGGGGAAGTGCTTCCATCGAAGAAGGACATGCAGGCTCATATAGCGTCACATAAGACCTTAAAATTTAGGAGTATTAAGCGTTTTCAGTGCGGGAGTTGTGGAAAGGCTTGCGCTAGCCAAGCGATGTTGATGATGCATGAACGAGTGCATACGAATGAGCGGCCTTATCCTTGTGGGCTGTGTACACTTAAATTTAAGACAAAGACACATTTGAGGACCCACCAGCTCACTCACACCCGGGAGAAGAAGTTTGGATGTTCCGTCTGCATGAAGTTCTTTGCTCTGAAAGGGAACTTAGTTGTACACCTCCGTACCCACACCGGAGAACGTCCATACGTCTGTTCGATATGCTCAGAAGCCTTCATAGACTCCAAATATCTCAAAAAACATAAGTTAAAGAAACACTATATTGATAATGTTCCGTGGAATCAATATTAA
- Protein Sequence
- MDSDPWSNLCRSCLSPNSEVSLLDAELDVKTKFVEVTTVEVADDDGLPQKLCGECYSKMNSAFEFRKQCIKMNTELKIQQETLIRQNKEYETTKMVSHNDDTANVMTELLSIIKQEPTDSDDDCYYVLVIDDPKDSDQEVKKIVKEEHIKQECDNSVDLTLQHDESEDSATRKVLEQKYDTYIDTTKVPANVPATILENEESPDIEEDNDVMDIDDTYMEDSVSQEQHLTQNEDSEEQNLELEISGNIDEPPNKKNFFKIITTNGKDGTIVFNGDDGIQYLTESQLVTHKDDDGNLINQEEVIFCEGEDSAQFQVLKCDGSELIIEYAGEEGDQIATVLQQEDGTYICDCGMEFEDLTEYEKHQHQHNPAGDHLCNLCGKGFESAEILSGHMVLHTVTGTLVTCPFCKQLIRRNGLTQHIKFSHNNLKPQCSSCSKTFANTNNLKRHMMIHSGVRDFECDICFKRFSQKITMQTHRLTHIDPFACIECDETFENQSGLMDHKSGDACTKSKVKRVKQELMKTVKQEVTTNLGKLLGYACSLCKKMFSVESALELHIEGHHMIDPSDLLCSECGEVLPSKKDMQAHIASHKTLKFRSIKRFQCGSCGKACASQAMLMMHERVHTNERPYPCGLCTLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICSEAFIDSKYLKKHKLKKHYIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -