Tacr023118.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735899.1:534117-569415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.8 3.7e+02 2.4 1.6 1 23 248 271 248 271 0.92 2 18 0.00017 0.011 16.7 0.4 2 23 331 353 330 353 0.95 3 18 0.062 4 8.6 0.2 3 20 393 410 392 410 0.95 4 18 0.0002 0.013 16.4 2.6 3 23 418 439 417 439 0.95 5 18 0.71 45 5.3 1.4 3 23 462 482 461 482 0.95 6 18 2.8e-06 0.00018 22.3 0.8 1 23 488 510 488 510 0.96 7 18 2.3e-05 0.0015 19.4 1.5 1 23 516 538 516 538 0.97 8 18 2.1e-05 0.0014 19.5 0.7 2 23 545 567 544 567 0.95 9 18 3.1 2e+02 3.3 3.5 3 23 675 696 673 696 0.67 10 18 0.0077 0.49 11.5 2.7 1 23 730 753 730 753 0.97 11 18 0.14 9.1 7.5 1.6 2 23 757 779 757 779 0.97 12 18 2.6 1.7e+02 3.5 0.1 1 19 785 803 785 804 0.90 13 18 0.033 2.1 9.5 0.0 3 23 815 836 814 836 0.95 14 18 5.2 3.4e+02 2.6 0.7 2 23 839 861 838 861 0.91 15 18 0.0078 0.5 11.5 0.6 3 23 888 908 887 908 0.98 16 18 0.0015 0.097 13.7 3.1 1 23 914 936 914 936 0.98 17 18 2.1e-05 0.0013 19.6 0.2 1 23 942 964 942 964 0.98 18 18 3e-06 0.00019 22.2 0.1 1 23 970 993 970 993 0.95
Sequence Information
- Coding Sequence
- ATGCCCGATATCCTCGCGTGCCGGGTCTGTCTCTCCACGGACAcgaagttgtacaagatatttAACAACAAACTGGCGCAGATGTATGGAGAAGTCGTTGGAACTAACGTATTACTGACAGATGGCCTGCCACAGTATGTCTGCTTCGTCTGTAGCGTACTGCTGCGCCGGGCCGCTTCATTCCGCGCTAAATGTCAACAAACATTACAGATACTGCAAAGCATGAGGGTCAATACTCCGGTGTTAACAACGGAAGTGATAAAAACCAAAACGTTACCAAAACCCAACTGGAGCACCACTAAGCCTCTTGTAATCGAAATTAAACCTGAAGCGAAACTGAATTTCAATCCTATAACTAAAAACGAAACAAGAATAATGCCAGACAATATCGAAGAACACATTCAAAAAACAGATACTACTAtgatacaaaatacaaaagaaACGATTACATTTGCCGATGATTTACAAGAGATCGTACAGGATATAGATGTCATTGACATTCCAGATGACATATTAGAGGAAGAAGATGACTTAAATGACATAGATGACGATGAAATTGATGCGTACATTTGGGGAAAACCTAAGAAAGGTCCAAAACCAATTAGTATTGACAATCGTTTGTTTGAAAACACGAAACTAATAGCTGAGAAATGGAATATGAGTTATACTTTGTTAACTAAAGAAGAGCAATTGGCAGATATGGAAGCACGTAAGGAATGCTCGAGATATAAAGAGTCTGAGTTCAAATGTGACTTGTGTATCAGACCTTTCAGTTGTGCAAAGACTCTCAAAGATCATGTGGAGTTATTTCATAAGAGCGGTTCGTTCGTCTGTGACTGCTGTCACTTCAGCTGTCGCACGAAGGCCCAGCTGGCCAGACATCATCACAACCAGCACGCCCAGCGCTTCCAATGCAGGAGCTGCAGTTACATAGGCAGGGGACGCACTCTATTACTCAAATTGGAACACATGAGATCACACAATAACTTGAACTGTAACATATGTGGGAAACGGTTCAAATTCGCTAAAGCCTTCGTTGATCACATCACCACAGATCATTCAcagGCTTTGGATGTCCGCTGTGAGTCCTGCGGCGCGCATTTCCTCACGGCAGACATCCTCGCCAAACATCAAGACTCCTCAACCAATATCGTCTGCGAcataaataaaagACCTTGCGGTCACTGCGGCGATAGTTTTGAAAGCTACGAATCACTCACCACACATATATGGGATATTCACGGGAGAAATTGTTATAAGTGCGATACGAAATTCACAACAAAATCCCAATACAAACAGCATTACCGCGAGGCCCACAGTCCGAGGCAGACTGCGCCTCGGAAGTCTCGCAAGGCCCTACGGAGGCGCCCTAAGAACATGCTTTGCGAGACTTGCGGATACTCTACTAATTGTTGGGAGACGCTCCGTACGCACCAGTACGCGCACACCGGCCAGCGCCCGCACGCCTGCCCGATGTGCGACAAGGGATTCAAGTCACGATACGCGCTCAGGGCGCATCTGAACTCCCACTCGGACGTGCGCCCCTTCCAATGCGCGGACTGCCCCAAGACGTTCAAATACAAGTTCAACATGGAGAGACACGTATTCGTCCACATGAATATCCGTAACATAAGCTGTCCAGTCTGCAGTAAAATGTTTAAACATAACGTTAATCTGTTACAACATATAAACTACGTACATTTGAAACGCTATAGAAGCCAACCTAAGGCACCAAAAGTCATTGATGAGACCAACGGAGTCCGTAAGAGACGTAAGAGGACCAAAAAGACCAAAGACGACCAAAGTATAGACAATGATAATCTGGGACAGTCTTCTGGTACTCGTAAGAGACGTAAAGTCAATGTGAAATGCAAACTTAACGAAAATGCAAAAGATAGTCAAGTCGTTAATTGTAATACGTTACTCCGCAAGGCAGCGTCGTTCCAAAAAATGTGCCGCCAGTCACACTATAAGTTGCAGGATCTGTGCGATTCACAGCCAGAGAGCAGCGCCCCCCTCGCGTGCCGCTACTGCCGCTACCGGTTCCTGTCGCGACGCCGTCTGCTGCAGCATCACCGCAACGTGCACTGGCGCCGCTTCGTGTGTCGTCAGTGCGGACACCGCACTAGCTGCAGCGGCCAAGTGCAGAAACACTTCAAACTCCACGAAAACCCAAAAGTGGCGCATCACAAGTGCTTGTTATGCTGGAAATCATTTCTAGACAAGAAGACCTTGCGCGTCCACACTCGCGTGTCGCACGCGCAGGCGCGCTGCCACGTGTGCGGCGACCAGTTCGACCACGCGGACAGGTACGCGACGCACCTACAGACAGCGCACAGGCAGGCGCTGTCCTTCCGTTGCGAGTCGTGCGGCCTTAACTTCCTGAGTGGCGAGGCCCTTAACAGGCACGAGGGCGGGCCCTGTCGCACAGAATGCAGACCTTGCGGTCAATGCGGAGCCGAATTCGACAACGATGAAGCCTTGAGCCAACATCTGAGAGAGACCCACGGGAAACAGTGCAGGAGGTGTGCATACATATACGTGAGCGAGAAGGAATACCGACAGCACTATTACCAAGTCCATAAGGTTCGTCTTCGCGTGCCAGACGAGAGTGGCCACCGCGACCGCATTCCAACGCAGACTGTCCCCTCGAATGCGCTCTGTGACATCTGTGGGCTCACGTTGTCGTGCCCCTCGGACCTGAAGAAGCACCAGCTGGTGCACACCGGCGAGCGCCGGCACCAGTGCTACCTGTGTGACAAGCGCTTCAGGCTCGACAGGGACCTTGTGACGCACATGAAGAGTCACTCAGACGAGCGTCCGTTCCAGTGCGCCGAGTGCCCCAAGGCGTTCAAGCTGAAGACGGCGCTCATGAGACACTTACTGATCCACCAGAACATACGCCGCTATCGCTGCGATATATGCGATCGAACCTTCGTCCAGTCCTCAGCCTTAAACGTACACGTCAACGGCGTCCACAAGAAAATGCCAAGAAATACCACATACAAACGACCGAAGAAAAAGCTCACAGACACGAAGAAAAAAGTTAATTCGACGAATAAAGTTAAAAGAAAAAGGAAAGGCGCTGAGGAATTATATGTTGATAATAGTTATGTGACAGAGACGAATCCAGAGGTTAATTTTGGGGGGTATGTTGGTCAATAA
- Protein Sequence
- MPDILACRVCLSTDTKLYKIFNNKLAQMYGEVVGTNVLLTDGLPQYVCFVCSVLLRRAASFRAKCQQTLQILQSMRVNTPVLTTEVIKTKTLPKPNWSTTKPLVIEIKPEAKLNFNPITKNETRIMPDNIEEHIQKTDTTMIQNTKETITFADDLQEIVQDIDVIDIPDDILEEEDDLNDIDDDEIDAYIWGKPKKGPKPISIDNRLFENTKLIAEKWNMSYTLLTKEEQLADMEARKECSRYKESEFKCDLCIRPFSCAKTLKDHVELFHKSGSFVCDCCHFSCRTKAQLARHHHNQHAQRFQCRSCSYIGRGRTLLLKLEHMRSHNNLNCNICGKRFKFAKAFVDHITTDHSQALDVRCESCGAHFLTADILAKHQDSSTNIVCDINKRPCGHCGDSFESYESLTTHIWDIHGRNCYKCDTKFTTKSQYKQHYREAHSPRQTAPRKSRKALRRRPKNMLCETCGYSTNCWETLRTHQYAHTGQRPHACPMCDKGFKSRYALRAHLNSHSDVRPFQCADCPKTFKYKFNMERHVFVHMNIRNISCPVCSKMFKHNVNLLQHINYVHLKRYRSQPKAPKVIDETNGVRKRRKRTKKTKDDQSIDNDNLGQSSGTRKRRKVNVKCKLNENAKDSQVVNCNTLLRKAASFQKMCRQSHYKLQDLCDSQPESSAPLACRYCRYRFLSRRRLLQHHRNVHWRRFVCRQCGHRTSCSGQVQKHFKLHENPKVAHHKCLLCWKSFLDKKTLRVHTRVSHAQARCHVCGDQFDHADRYATHLQTAHRQALSFRCESCGLNFLSGEALNRHEGGPCRTECRPCGQCGAEFDNDEALSQHLRETHGKQCRRCAYIYVSEKEYRQHYYQVHKVRLRVPDESGHRDRIPTQTVPSNALCDICGLTLSCPSDLKKHQLVHTGERRHQCYLCDKRFRLDRDLVTHMKSHSDERPFQCAECPKAFKLKTALMRHLLIHQNIRRYRCDICDRTFVQSSALNVHVNGVHKKMPRNTTYKRPKKKLTDTKKKVNSTNKVKRKRKGAEELYVDNSYVTETNPEVNFGGYVGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -