Tacr022699.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2838515-2841603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.063 4 8.6 2.4 1 23 71 94 71 95 0.94 2 18 0.024 1.5 9.9 0.6 2 23 169 190 168 190 0.96 3 18 0.0053 0.34 12.0 0.1 1 23 194 216 194 216 0.98 4 18 0.27 17 6.6 0.6 1 23 221 244 221 244 0.94 5 18 0.0073 0.47 11.5 1.5 2 23 252 274 251 274 0.92 6 18 3.1 2e+02 3.3 1.8 3 23 282 303 280 303 0.92 7 18 0.00026 0.017 16.1 4.1 1 23 309 331 309 331 0.98 8 18 0.0033 0.21 12.6 2.0 1 23 338 361 338 361 0.94 9 18 0.035 2.3 9.4 0.5 1 23 480 503 480 503 0.94 10 18 1.6 1e+02 4.2 1.1 2 23 530 552 529 552 0.91 11 18 1.3 87 4.4 2.7 2 23 575 596 574 596 0.95 12 18 0.0094 0.61 11.2 0.2 1 23 600 622 600 622 0.96 13 18 0.0037 0.24 12.5 6.9 1 23 630 652 630 652 0.98 14 18 0.2 13 7.0 2.1 1 23 658 681 658 681 0.91 15 18 6.4e-07 4.1e-05 24.3 1.2 2 23 689 711 689 711 0.98 16 18 2.6e-05 0.0017 19.3 3.7 1 23 717 739 717 739 0.98 17 18 4.5e-05 0.0029 18.5 2.6 1 23 745 767 745 767 0.98 18 18 1.4e-05 0.00091 20.1 1.0 1 23 773 796 773 796 0.96
Sequence Information
- Coding Sequence
- ATGGACCATGAACAGGCGGTAAACGAAGAAACTGCCTTGGAAATTAAAGTAACAGCGCAATGCGCTACTACGAAATCTAGAGTCTCAGAAAACAAACTTACACAATATAACCGACTGAATAAATGTGAACTTGAAAAGCACCACAATAATATTAGACAAATTCTAAATTATTCTAATGCTACCCCCATAAATGGCCACGATGGCATGGGATACCGTTGTTGTTATTGTAAGAATGAATTTGAAGAACCAGCCGATCTGAAGGAGCACACTTTGGAGCTGCACCACGATGATGACGTTTCCAAAGCTAGTTTCATGGAGAAACGCATGACGTTACGTGGTTTTTTAGTCAAACTTGATATTACAGCATTGCGTTGCAACGAATGCATGATCCACATCGATACGCTTGACAAACTGGTTGAACATATAGCGAACCTTCATAACGTAACGATGTACACGGGAATTAAGGATTTGATCATACCATTTAAATTCGATAGCGATACTCTCACGTGCTTCATATGTTTAAACGTCTTTTACAATTTCAAAATGTTACTACAACATATGAATATTCATTACCGGAATTACATTTGCGATATATGTGGCGCTGGTTACATAAATCTTGTTCGTTTGTTTTGGCATCGGAGAAACCATGATGTCGGACCATTTACCTGCGACTACTGTCCCAGTGTATATAAAACGATCCAGTACAAAAGAGAACACGAAAAAGTTGCTCATTTTGGAAAGCCAGCTAAGAATAAGTGTGGTATTTGCGGCAAAAAATTCAAATACCATTATCTTAAAGTGACACATATTTCCGAAGTGCACGGCGTAGATACGCGTACTGATTGCCAAGTGTGCGGGAAAACAATGGCCTGTGCGAGGAAGCTAAGGCAACATGTGAATAGAACGCATTTGCTCTATAAAAGACATAGGTGTACTCTTTGCGACATGGCTTGTTACTCGAAATCGGAACTCCGTGCACATATGTCCAAGCATGACACCACTGACGAGCGATTCATCTGCAATGATTGCTCTAGACCTTACAGAAGCAGGAAGGCATTGCTGAACCACTTCAAGCATGCCCACGCAGACCAAGGGGAATCCTCCATTATCATTTTACGCAGTGCTCGACTCGAAACTGATTGCATCTCAATGGAAACTGAAGAGGCCTCTGTTTCTGATCCGGATGGGAGTATTCAACACGAAGACGAGCATCATATCATCAATGAAGATGATGACGGGCCACCTAAGGAAACTGAAGAGGCCTCTGTTTCTGATCCGGATGGGAGTATTCAACACGAAGACGAGCATCATATCAACAATGACGATGATGACGGGCCACCTATTAGCAAACTAGATATTGACAAGCACACCGCCAACCTCAAGGAAATACTTCTGTGTTCGAACGCAACGCCAATCCGAAACGGTGCATATCTCAGATACAAGTGTTGTTTCTGTCCCGACAACTATCCTCAGCCGGCTGAACTGAAGCGGCACACTATTGAAGCACACCCTGATACCAATAAAGAGAAATACGGAATGATTAGAAATGTGCGGAGGATACCTGTGAAATTAGACATTACATCGTTAAAATGCAAAATATGTCACGGCGACTTTGACGCATTGGAGCAGTTCGTTCAGCATCTGGAGCATGTTcacaataaaaatgtattaacCTGTGGACTAAAATTTATACTACCGTTTAAATTCGAAACTGAAGAGTTATGCTGTTGTATTTGCGCCGCTGTGTTTAATTCGTTTAAGAAAGTCACTGAACATATGTCCGTACACTACAGTAATTTCATTTGCGAGGTATGCGGTGCTGGTTTCATGTCCCATATTAATTTATCATCGCACGTTTCGAATCATAACAAAGATCCAAACGCCTCGTACAAATGCACCTACTGTCACAAAGCATTTGCAAGTTACAAGAACAAAATGACTCACCAGCATATCCACACGCATCCATTCAAATATAAATGCGCATACTGTACAGAGTCATTCAAAGGAATAACGAAACACAGAAAACATATGCTCGAAGCCCACGGCTTGTCGGAACATGCTCGCAAATGTCAAACATGTGGAAAAACGTTTAAAAATTCTGAATTATTGAGGGTGCATATAAAAACAGTGCATACGATGGACAAACCTCATCAATGTTCGAAGTGTGATATGCTATTTGTAAGGTCCTCGAGTTTGACAAAGCACATGTCTAAACACTCCGACGCACGTCCGTTCAGTTGCAGCGTGTGTCAGAAAGCTTTCAAAGAAAGACATTATATGAATGTTCACATGCGTGTTCACTTGGGCGACCTGAAGTTCAAGTGCGATCTGTGCGAGAAGGCGTTTgcacaaaaaaaatctttaagaAGTCACATATATTCCATGCATAGGCAGTATTTCCAATAA
- Protein Sequence
- MDHEQAVNEETALEIKVTAQCATTKSRVSENKLTQYNRLNKCELEKHHNNIRQILNYSNATPINGHDGMGYRCCYCKNEFEEPADLKEHTLELHHDDDVSKASFMEKRMTLRGFLVKLDITALRCNECMIHIDTLDKLVEHIANLHNVTMYTGIKDLIIPFKFDSDTLTCFICLNVFYNFKMLLQHMNIHYRNYICDICGAGYINLVRLFWHRRNHDVGPFTCDYCPSVYKTIQYKREHEKVAHFGKPAKNKCGICGKKFKYHYLKVTHISEVHGVDTRTDCQVCGKTMACARKLRQHVNRTHLLYKRHRCTLCDMACYSKSELRAHMSKHDTTDERFICNDCSRPYRSRKALLNHFKHAHADQGESSIIILRSARLETDCISMETEEASVSDPDGSIQHEDEHHIINEDDDGPPKETEEASVSDPDGSIQHEDEHHINNDDDDGPPISKLDIDKHTANLKEILLCSNATPIRNGAYLRYKCCFCPDNYPQPAELKRHTIEAHPDTNKEKYGMIRNVRRIPVKLDITSLKCKICHGDFDALEQFVQHLEHVHNKNVLTCGLKFILPFKFETEELCCCICAAVFNSFKKVTEHMSVHYSNFICEVCGAGFMSHINLSSHVSNHNKDPNASYKCTYCHKAFASYKNKMTHQHIHTHPFKYKCAYCTESFKGITKHRKHMLEAHGLSEHARKCQTCGKTFKNSELLRVHIKTVHTMDKPHQCSKCDMLFVRSSSLTKHMSKHSDARPFSCSVCQKAFKERHYMNVHMRVHLGDLKFKCDLCEKAFAQKKSLRSHIYSMHRQYFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -