Tacr023175.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- RNF220
- Assembly
- GCA_963506565.1
- Location
- OY735899.1:1335238-1362666[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0036 0.23 12.5 0.7 2 23 234 255 233 255 0.96 2 13 0.0036 0.23 12.5 2.0 1 23 262 285 262 285 0.96 3 13 4.9 3.1e+02 2.7 1.9 1 23 289 311 289 311 0.95 4 13 2.7e-05 0.0017 19.2 2.2 1 23 316 339 316 339 0.98 5 13 0.11 6.9 7.9 2.5 1 23 343 366 343 367 0.95 6 13 0.057 3.7 8.7 0.2 3 21 385 403 384 408 0.93 7 13 0.0022 0.14 13.2 0.1 2 23 417 438 417 438 0.97 8 13 0.0037 0.24 12.5 2.8 2 23 460 482 459 482 0.96 9 13 3.6e-05 0.0023 18.8 1.5 2 23 492 513 491 513 0.97 10 13 2.4e-06 0.00016 22.5 1.8 1 23 519 541 519 541 0.99 11 13 8.1e-07 5.2e-05 24.0 2.7 1 23 547 569 547 569 0.98 12 13 7.5e-05 0.0048 17.8 1.0 1 23 575 598 575 598 0.96 13 13 0.46 29 5.9 0.1 2 20 736 753 736 755 0.90
Sequence Information
- Coding Sequence
- ATGTTCGATATATCTATGTGCCGGCTGTGTTTAGCATCTGACGTTCATTTGCACGCTATAATGGGAACGCCACTTCAAGATATATTCGAGAAACTCACCAATATTTCTCTGTCCTCTGAAGACGGGAAGCCACTCCTGGCTTGCTACATATGCTACTCGCAGCTCAAGAAATGTCACACCATTATGAGGAAAGCAGTGAATGCTGATGCATTGCTCAACGAGCTGCTGCATCATGGAGTGATATCGAATAACTCAGTGTCAGAACAGGACAGACAGTTGTACAATCTCATCATAGGTCTAACAATAACTCAGACAGTGTCTGTTGCTATCGAGGATATGGCCACAGTGCGTGCTAAGCGGGAGCTTGTGGTAAAGACTGAAGCCATTGAAGTACCCATTAAAGTAGAGATGGAATGTGATGGTGAAGCATCAGATACGGATAATCATGACTCCGGTCTTCATAAATTTCAACCATCGGATTCTGATGATGACTTGCCTCTGAAGAGTATTAGTACTAAAGCCCGTCCCATGAGAGCCAAGAATACACGTGTTAGAGTGAGAAAGAAACGTCAAGACAATGGTAGAGCTGAGACAGgtccCATAACAGACTTCGCCCGTGAAATCATTCTGAGCAAAGATCAACAGCAACAGGAATTACTGGATCGTTCTAAATCCCTCAACTATCTGAACTCGCCTCTGAAATGTGAGCTGTGTTACAAAGGATTTGTGGATAACAAAGCCTTTGAGAACCATAAGGAGAAACATGACGAGaaaAGCGGTCCCCACGAGTGTGAAGTGTGCCGCATGCGGTATTCCACCGAGAGACAGTTGCGTACACACACGGCGACCTCGCACAGTCGCCGCTACGCGTGCGACAAGTGTGAACACAGCTCACATACTGCAAACCAAGCACGGGAACATGAGAAGTGGCACAGCGGTTATATGTACGAGTGTACTCTATGCGGGCAGAAGTTTAGAAAGCCAACGTCGTACCTCACGCACATGCGCAAGCGTCACCCGACCGAGCACGTGTGCGACCTGTGCGGGGACAGCTTCGTGGGCCAGCACGGACTCACCATGCACAGGGCCAAGACGCACCACCGAGACGGGAAGCGGCCAGAGAACGCGTCCGAACCCCCGTCGGAGCGATTCTGTGCGGAATGCAATATCCAGTTTATGAGTAAGGACGCCTGGAAGCGACATATCCTCAGCTCGGCCAAACATACGCTGGATAATGAAAATAGTCCTCAGTGCCGACTGTGCGACGCTCGGTTCCCGTCAAGTGCGGGGTTGAGCGCGCACTTGAGAGAGCACGAACGCGCCTTGAGAGCGGCGCGTACGTCACGCGCGGCCAAAGGCAAGATCACTGCGAAATTGACATGCGAACAGTGCGGTGGTCACTTCAATGACCGCTCAAAGTTACACGCGCACGTCAAGAGGATGCATCTGGgacttaaatataataaaaacatagtTTGCGAAGTTTGTGGACAAAAGTGTACATCCAACGCCTCGTTGAAGTACCATCAGCGCACTCACACCGGTGAACGGCCCTACCAATGCAGCGCGTGCGATAAAAGATTCTCCGACAGAAACCAGCTGCGGATACATACTAGGACTCACACAGGCGAGCGTCCCTACTGCTGCACTGTATGCGGGAAGCGGTTTAGCCAGAAGCCCGCGCTTAACAGACACTACAGGGTGCACACAGGCGCAAAACCCTACACATGCACGTATTGTGCGAAAACATTCAGCCAATCAAATTCGATGAAATTGCACGTTCGAGCGATCCATTTAAAAATGCCCCCTAATAATAGGAAGAATAAAGCTCAAAATGTTATAGCCGTTGAAAAGGTAGAAGTGACTATTTTACAAGACTTAAGCCGCAAAAAAGTTAGTGAGTTGCCAAATTGTCCAGTTTGTAGTTGCACTATAAGGCAGGGCGAACTTGATTCGCATTTATCTCTTGAAGTTGAGAGACTACATAAGTTATCTAATGGTGGGAGTAAGAGGAAGTTGAGTGTTAATTCGAGTGGGTCTGGTTCTAATTTGGCGCTCCCAGGATCTAGTACCAGCACTGATATTCCTGAAGAAGATGTCGATGTGACTGGATGTCCTGGAGGCGACGTTTATCTGCGAATCAACACAAACCGACTCCGTCGTCTCCGAGCCCGTCGGCGCTGCACCCCGCCTCCGCCGCAAGGGCAGTGCCCTATATGTAACGAGACGGTGCAGACTTCAAGGCTGCAGCGTCATGCCCTGCGCTGCTTGAAGAGAACCGGTGCCCCTATCGACGAGGACGTGCCGGATACTAGCTCAGAGGAAGGCAGCATCGATGTGGAGAACGACGCCGACGCCCCCTCCGTCGACGACGAGCCGTCTGGCTCCGGCGGCCCGTTCGGTGCCGAGTACCAGTGGTGCGGCGAGTGGCGCGTGCGGGCCACCGCGCTGCAGGCCCCCGCGGCCGGCGCGGCCACCAGCGTGCGCCGCGCGTCACACGACCAGGCGCTGGTGGTGGACGGGGATGAGGACAGTGAGCTGTACGGCCCGCCGCAGTACCCGCCGTCGGCTATAGCGGTAGATACAGAATTACATAGCAGAACAGAAGATCACGCGGAGAACGGCACAGAAGAGACTAACGGGGAACAAGAGGATGAAGAGGAACATTTAAAGCCCAAGGGAATGGTGGAAGCGAGTGCCGAAACCCGGATTCAAGCACTGAAAGCAAAAATTAGGGACTTAGAGAAGAAACAAAACTCATCGGAGGCCAAATGTTTGATATGTTTGGGAGGATATACATCGCCTGCAGTCTCCATACAGTGTTGGCACGTGTATTGTGAGGTGTGCTGGTTGCAATCGCTCCGTGCTAAGAAGATATGTCCGCAGTGTAACGCTATCACAACCGCCGACCATCTTCGTAGGATATACATGTAA
- Protein Sequence
- MFDISMCRLCLASDVHLHAIMGTPLQDIFEKLTNISLSSEDGKPLLACYICYSQLKKCHTIMRKAVNADALLNELLHHGVISNNSVSEQDRQLYNLIIGLTITQTVSVAIEDMATVRAKRELVVKTEAIEVPIKVEMECDGEASDTDNHDSGLHKFQPSDSDDDLPLKSISTKARPMRAKNTRVRVRKKRQDNGRAETGPITDFAREIILSKDQQQQELLDRSKSLNYLNSPLKCELCYKGFVDNKAFENHKEKHDEKSGPHECEVCRMRYSTERQLRTHTATSHSRRYACDKCEHSSHTANQAREHEKWHSGYMYECTLCGQKFRKPTSYLTHMRKRHPTEHVCDLCGDSFVGQHGLTMHRAKTHHRDGKRPENASEPPSERFCAECNIQFMSKDAWKRHILSSAKHTLDNENSPQCRLCDARFPSSAGLSAHLREHERALRAARTSRAAKGKITAKLTCEQCGGHFNDRSKLHAHVKRMHLGLKYNKNIVCEVCGQKCTSNASLKYHQRTHTGERPYQCSACDKRFSDRNQLRIHTRTHTGERPYCCTVCGKRFSQKPALNRHYRVHTGAKPYTCTYCAKTFSQSNSMKLHVRAIHLKMPPNNRKNKAQNVIAVEKVEVTILQDLSRKKVSELPNCPVCSCTIRQGELDSHLSLEVERLHKLSNGGSKRKLSVNSSGSGSNLALPGSSTSTDIPEEDVDVTGCPGGDVYLRINTNRLRRLRARRRCTPPPPQGQCPICNETVQTSRLQRHALRCLKRTGAPIDEDVPDTSSEEGSIDVENDADAPSVDDEPSGSGGPFGAEYQWCGEWRVRATALQAPAAGAATSVRRASHDQALVVDGDEDSELYGPPQYPPSAIAVDTELHSRTEDHAENGTEETNGEQEDEEEHLKPKGMVEASAETRIQALKAKIRDLEKKQNSSEAKCLICLGGYTSPAVSIQCWHVYCEVCWLQSLRAKKICPQCNAITTADHLRRIYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -