Tacr022656.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2600716-2611629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.028 1.8 9.7 0.3 2 23 2 24 1 24 0.95 2 33 0.01 0.67 11.1 0.7 2 23 94 115 94 115 0.96 3 33 0.00059 0.038 15.0 1.1 1 23 119 141 119 141 0.97 4 33 4.4 2.9e+02 2.8 0.7 1 21 147 167 147 168 0.91 5 33 0.48 31 5.8 0.5 2 21 176 195 175 198 0.85 6 33 0.0044 0.29 12.2 4.7 1 23 205 228 205 228 0.95 7 33 0.0027 0.17 12.9 0.2 2 23 233 255 232 255 0.94 8 33 0.046 3 9.0 4.2 1 23 261 283 261 283 0.99 9 33 0.025 1.6 9.9 1.8 2 23 324 346 323 346 0.96 10 33 1.8 1.2e+02 4.0 0.4 2 23 371 393 370 393 0.92 11 33 0.026 1.7 9.8 0.7 1 23 415 437 415 437 0.97 12 33 0.023 1.5 10.0 0.4 1 23 441 463 441 463 0.96 13 33 0.061 3.9 8.7 1.2 1 21 469 489 469 490 0.93 14 33 0.6 39 5.5 2.2 2 21 498 517 497 520 0.83 15 33 0.0012 0.079 14.0 1.3 1 23 527 550 527 550 0.95 16 33 6.1e-05 0.004 18.1 1.2 2 23 555 577 554 577 0.96 17 33 1.5e-05 0.00094 20.0 0.5 1 23 583 605 583 605 0.98 18 33 0.085 5.5 8.2 0.4 2 21 696 715 695 716 0.92 19 33 0.012 0.78 10.9 1.4 2 21 742 761 741 762 0.95 20 33 5.5 3.5e+02 2.5 1.4 3 23 771 793 771 793 0.94 21 33 0.0033 0.21 12.6 2.0 1 23 799 822 799 822 0.97 22 33 8.6 5.5e+02 1.9 1.5 1 8 826 833 826 834 0.90 23 33 0.11 6.8 7.9 2.9 2 23 858 880 857 880 0.96 24 33 0.11 6.8 7.9 2.9 2 23 911 933 910 933 0.96 25 33 0.62 40 5.5 0.7 1 23 968 991 968 991 0.95 26 33 0.84 54 5.1 0.1 3 23 1065 1085 1063 1085 0.91 27 33 0.0012 0.077 14.0 0.4 1 23 1089 1112 1089 1112 0.92 28 33 0.79 51 5.1 0.4 2 21 1117 1136 1116 1137 0.92 29 33 0.11 7 7.8 0.4 2 23 1145 1167 1144 1167 0.92 30 33 0.0022 0.14 13.2 0.5 1 23 1174 1197 1174 1197 0.88 31 33 0.036 2.3 9.4 0.3 2 23 1203 1224 1203 1224 0.91 32 33 0.00019 0.012 16.5 2.7 1 20 1230 1249 1230 1252 0.93 33 33 3.9e-05 0.0025 18.7 2.3 1 23 1258 1281 1258 1281 0.97
Sequence Information
- Coding Sequence
- ATGCGCTGCTTTTACTGCAGCGAACGTTTCGAAGATCCGGGTCGTTATAGAACTCACATTGACTCGATCCACCTTAACGAGAACAAGATTAGAAATCTCAAACCACTGGAAGATTTCTTGACGCGAGTCGATATAACGAATCTTCGTTGCAAATGTTGCGTTACAATTTGTCCCACTTTGGAAGGTCTGGCGGAACATTTGATTGCTGTACACGGTCTCGATATTGACATGGGACAGAACCTCGGCTTGATGCCGATGAAACTGGAAGCAGATAATAATGAATGCACGACGTGCTCAATGAAATTCGTTAGACTGTTTGACCTCTACAGACACGTCGGCACACATTACACCGTGCATGTCTGTGAGATATGTGGGAAAAATCTTCAGTCCGCCAGCGGATTTAGATACCACATGAAAAGTCACGATTTAACAAAGAGATTTGCATGTAGGCGTTGCAAAATGGATTTTGCGTCGTCAGCGGAAAGGAAAGAACATCATTTGAAGAACAATTCTTGTAGGCAGCTAAAGTGCAGTCATTGCGAAGAAAGATTTGTGTCTGATGAGAAGAGAAATGCTCATCTAGTCGACGCCCACGGTTTACCAGCTGTCGTGTATCGATGTAAAAAGTGCGATCAGGCTTTTAAATACCGCTGCTTGTTGCTCAAACACTTCAAAGAGGCACATACTGAGTTCAATAAGTGTTCGGAGTGTAGGATGACGTTTACATCAGCACAGGCTTTGGAAGAGCACGTAAACGAGGGTCATTCCAACATGCAACCTTTTAAATGCAAAGTATGCGATGTCGATTTCTATTGCAGCTTCAGTTTGATCAGGCATAGACGAAGCCATAATGAGGTTAGGAATTTTAATTACTTAGACGAAGGAGACCTGGATCCGGTCAAGCAGAACGCCCTGGTAATATTGAACAACTCCTCAGCGTACCCATTCTACCAGGGTCACAACTCCATCCGCTGCTTTTACTGCAGCGCACATTTCGACGATCCAGGATGTTTTAGAATTCACATGGACACGATCCATCAAAATGAGGACGAACTAGAAACTATCAAGGCTTCGGAACATGTCATAACACGAGTCGATATAACGAATCTACGCTGTAAAATCTGCATTAACAGCTTTTCAACAATAGAAGTTCTGGCGAAACATTTGATTCACGAGCATCGTCTAAGTATCGACATGACGCATAGCCTCGGCTTAATGTCGATGAAACTCGACCCAGACAACTACGAATGCGTGACGTGCTCAAAGAAATTCGTGGGACTATTTTACCTTTACAGACACGCCGGCACACACTACAGCGCTCATATTTGTGAGATCTGCGGCAAGAATCTTCAATCACTCGCTGGGTTCAGAAGTCACGTCCAGAGTCATGATTTAAAGAAGAAATTCTCATGTAAACGGTGCAATATGGAATTTTCGTCTTCAAAGGAACGAAAAGAACATCTTTTGAAGAGCAACTCTTGTATGCCGCTGAAGTGCAAGCATTGCAATGAACGGTTTGCACATATTGAGAAACGGAATTACCATTTAGTCGAAGTTCACGGATCACCTAATATCACTTATAAGTGTAAAAAGTGCGGGAATGCTTACAAGAGTCGGTCGGTACTGCTCAGACATTTCAAAGAAGCTCACACAGAGTTTAACAAGTGTGAAGAGTGCGGAAAGACTTTTCCGTCTGCATTAGAGTTGAAAGAGCACATGTATAGATGTCACACCAATGAACGGCCTTATGAATGCAATGTCTGCGACGCCAATTTCAATTCAAGTGTTAGCCTTAGAAGACATAAACGAATCCATGATGAGAGCGCCAAATTGCATTCCCTAAATCGAGAGGAAGCACTGAATGCTGAGGAACGCAATGCCGCTATTATATTGAAATATTCGACTGCGTATCCATTGCAATTGGTCACCGGCTACATAGGCTGCTTCTTGTGCTCCGACCGTTTCGAAGACCCTCGTCGGTTCAGAGATCACATGGATTCAACGCACCCTAATGATGATAAAACGCCGATCATAATTAACCGCAGTCGCTCGATTTCCTTAGTACGCGTTGACATCACAAAGTTACGATGTAAATGTTGTGGTGAAGAGTTTTCATCTTTAACAAGTCTCGCAGAACATTTGAAAGTGTGTGGTTTAAAATTCGAATCTAGGAAAGGTATAGATGGCCACGTTCGCAACAAACATCTTAAAGCAACTGATATAAGTTGCAAGCGTTGTAAGAAAAAATTCTCAAGTACTGCTGAAAAGAAGAAACATATTCGAGAAAACAGGACGTGTCTTCCACTAGGGTGCCCAATATGCAAGACGGAGCGCTTTAATAATGCGAAACATAAGAATGAACATTTAGCTAAAGTCCATGGTAAAGGGAAGGTGTACAAATGCACCGAGTGCGCGGAGACTTTTGAATATAGGTCTAAATTATACCAGCATTTCAATAAAGTCCACACCGAGTATTACAAATGCCCATATTGTGACACGGAGGAGCACAACGCCATCATTATACTGAACCACTCCACTGCGTACCCGTTCAAGTTAAATGGCAACTCGATACAATGCTGTTTCTGCTCCAACTGTTACGACGACCCTTCCATGTTTAGAGAACACATGGACACTGCGCATCGATCCGTCGACCACACGGAGGTGCACAACGCCATCATTATACTGAACCACTCCACTGCGTACCCGTTCAAGTTAAATGGCAAGTCGATACAATGCTGTTTCTGCTCCAACTGTTACGACGACCCTTCCATGTTTAGAGAACACATGGACACTGCGCATCGATCCGTCGACCAGTTCGATCCATTAATCGAAGCAAGAAACAACGCCAAGGTAATCATAGAACATTCCACGGCGTATCCATTTCGGTTACCTCTAAATGACTTCGTTTGCGTTTATTGCTGCGAGAAGTATGAAGACCCTGTCGAATACAGATCGCATATGGAGCAGGAACACAAAAGTTTCTCTCCAGAAACCGCCGTCGCACATTTAAAGAGAGCACTCACGGAATTTATTAAAGTTGACTGCACAGACTTGAAGTGTCGAGTTTGTCTCGAGCAATTCGATGACATTGAAAAAATCGCGCTGCATTTAAAAGAAACTCACAGTAAAACCTTGAACTTGGAGGTGCAATTAGGACTGCAAATATATAAATTCGGTCAAGAGAAATGGGTCTGCATCAACTGCAATGAAAAATTGCCTACATTGAAAGCGCTCAGTAGACACGTGAATCGCCATTATCACAAGTACTCCTGCGAGACCTGCGCCAGGTCTTTCGGATCCACTGACAACTTAAACCGGCACGTTTCTTTTGCTCACGCGGGCGCAAAGGTTTGCGTTAGGTGTAAGAAACATTTTCCCGACATTGAGTCGAGGCGTCAGCACATGCTTGCGTCTAAACCATGCTGGCGACTCAGTTGCAGTCTTTGTGGCGAAAGATTTGTTTCGAGGAAGTTAAAACTGGAACACCGAGCTAAAGAACACGGAGAGACACCTCAAGTTTACAACTGTCCTGAATGCGGaaaagtttttaataaatttcgtTTGTACAGTGcacattttgttatatcccatacGAATCGTTGTCGCGAATGTTCTTTCTGTGGACTGAAATTTGACAATAGCAGATCGTACAATGAGCACGTGGTGGGACATACAAATGAAAAAGTGTTTCATTGTGACGTCTGTACCAAAACGTTTAGCAGAAAGAGGAACCTTGAACAACATAAATGGGTACATAGTGTCCAAAAGCGCTTTGAGTGCACTCTATGTGATAAAAAGTTTAATCAACGAGTTAGTTGGAAGACGCATATGAAGTCTTACCACCCGGAACTAGTAGACTTCGAGTAA
- Protein Sequence
- MRCFYCSERFEDPGRYRTHIDSIHLNENKIRNLKPLEDFLTRVDITNLRCKCCVTICPTLEGLAEHLIAVHGLDIDMGQNLGLMPMKLEADNNECTTCSMKFVRLFDLYRHVGTHYTVHVCEICGKNLQSASGFRYHMKSHDLTKRFACRRCKMDFASSAERKEHHLKNNSCRQLKCSHCEERFVSDEKRNAHLVDAHGLPAVVYRCKKCDQAFKYRCLLLKHFKEAHTEFNKCSECRMTFTSAQALEEHVNEGHSNMQPFKCKVCDVDFYCSFSLIRHRRSHNEVRNFNYLDEGDLDPVKQNALVILNNSSAYPFYQGHNSIRCFYCSAHFDDPGCFRIHMDTIHQNEDELETIKASEHVITRVDITNLRCKICINSFSTIEVLAKHLIHEHRLSIDMTHSLGLMSMKLDPDNYECVTCSKKFVGLFYLYRHAGTHYSAHICEICGKNLQSLAGFRSHVQSHDLKKKFSCKRCNMEFSSSKERKEHLLKSNSCMPLKCKHCNERFAHIEKRNYHLVEVHGSPNITYKCKKCGNAYKSRSVLLRHFKEAHTEFNKCEECGKTFPSALELKEHMYRCHTNERPYECNVCDANFNSSVSLRRHKRIHDESAKLHSLNREEALNAEERNAAIILKYSTAYPLQLVTGYIGCFLCSDRFEDPRRFRDHMDSTHPNDDKTPIIINRSRSISLVRVDITKLRCKCCGEEFSSLTSLAEHLKVCGLKFESRKGIDGHVRNKHLKATDISCKRCKKKFSSTAEKKKHIRENRTCLPLGCPICKTERFNNAKHKNEHLAKVHGKGKVYKCTECAETFEYRSKLYQHFNKVHTEYYKCPYCDTEEHNAIIILNHSTAYPFKLNGNSIQCCFCSNCYDDPSMFREHMDTAHRSVDHTEVHNAIIILNHSTAYPFKLNGKSIQCCFCSNCYDDPSMFREHMDTAHRSVDQFDPLIEARNNAKVIIEHSTAYPFRLPLNDFVCVYCCEKYEDPVEYRSHMEQEHKSFSPETAVAHLKRALTEFIKVDCTDLKCRVCLEQFDDIEKIALHLKETHSKTLNLEVQLGLQIYKFGQEKWVCINCNEKLPTLKALSRHVNRHYHKYSCETCARSFGSTDNLNRHVSFAHAGAKVCVRCKKHFPDIESRRQHMLASKPCWRLSCSLCGERFVSRKLKLEHRAKEHGETPQVYNCPECGKVFNKFRLYSAHFVISHTNRCRECSFCGLKFDNSRSYNEHVVGHTNEKVFHCDVCTKTFSRKRNLEQHKWVHSVQKRFECTLCDKKFNQRVSWKTHMKSYHPELVDFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -