Tacr022650.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2576263-2583327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.7e-05 0.0036 18.2 0.8 1 23 12 34 12 34 0.98 2 18 0.2 13 7.0 0.5 1 19 100 118 100 120 0.94 3 18 3.2 2e+02 3.2 0.1 2 23 148 170 147 170 0.89 4 18 0.0012 0.078 14.0 1.1 3 23 195 215 193 215 0.96 5 18 2.8e-05 0.0018 19.1 1.2 3 23 221 241 220 241 0.97 6 18 0.0051 0.33 12.0 1.2 1 23 266 289 266 289 0.96 7 18 0.044 2.8 9.1 1.7 1 23 295 318 295 318 0.95 8 18 0.00029 0.018 16.0 1.1 3 23 326 346 324 346 0.97 9 18 7.9e-07 5.1e-05 24.0 0.8 1 23 352 374 352 374 0.99 10 18 1.9 1.2e+02 3.9 0.4 2 22 498 518 498 520 0.84 11 18 0.0063 0.4 11.8 4.5 1 23 542 564 542 564 0.97 12 18 0.00035 0.022 15.7 1.1 1 23 568 590 568 590 0.98 13 18 0.023 1.5 10.0 0.3 1 23 595 618 595 618 0.95 14 18 0.00025 0.016 16.2 2.5 1 23 624 647 624 647 0.98 15 18 0.15 9.9 7.4 1.3 1 23 654 677 654 677 0.93 16 18 0.0011 0.074 14.1 1.5 1 23 683 705 683 705 0.93 17 18 1.5e-06 9.6e-05 23.2 1.1 1 23 711 733 711 733 0.99 18 18 6e-05 0.0039 18.1 4.3 1 23 739 761 739 762 0.95
Sequence Information
- Coding Sequence
- ATGAACGAGCACATAAACGCGCATTATCAAAACTATATTTGTGATTCATGTGGAAAAGCTTTCGTGTCTAAATCCAGATTTCGAACTCACGTTCAATCTCATGAAATAGGCAGCTTTCCTTGTGGCGAGTGTGATGAAATTTTAGAGACTCGAGCAGCACgTATCATCATATTGAACTGTGTCGAATCTAAAGTCGAATGGAAGCAATCGAGGCGCAAGTATAACGATCGTCGGGACAATGCGGCTATTATCATTGAATGCTCTAATGCGAGCCCTTTTAAATGGACAAGAGGCACTTACGCGTGCCCATATTGTCCCAATGAATTTGGAGATTTCCCCCAACTCAAAGACCATTCGTGCCCCACTAAGCACTCAAACCGAATGAATGTTATGTGTAATGCACGAAGACACATTAACATCAAAATTGAGATCAGTGATCTCCGATGTGAGCTATGCCTCGAAAGTTTCGataattttgacattttcaTAGACCATTTGATTAAGGCACACGAGAAACCTATACAAAAAGAACATGGAGTTGGTGTGACTCCTTATAAACTCCTACATAAGAACAAAATTGCCTGCGTACACTGTAATAAGCAATTCGTGTTGTTCAACGAATTGAACAGGCACATGAACGAGCATTATACCAACGAAATTTGTTTCCAGTGCGGAAAATCTTTTGCGTTTGCGCATAATCTTACGTCTCACCTAGCAACCCATGAGGCTAAGAAAAACAAAAGTTCTCCGACTAAATCTTTACAACAAAGTAAAGCCAACACTTCCCGAAAGGCATACAAGTGTCCTTATTGTAATGAATACTTCAAATTATATCCTAGTCGAATGAAACATTTGAGAGAAGTACATAATGTGGAGATAGATTACGCTTGTCATCTATGCCCAGCCAAGTTTACGTTGCGTAATCTGAGAAAGAAGCATATTGAACGAATGCACATTAGGAATAAACAATTTGGTTGCGATCTTTGCCCTTATAAGTTTGTTACAAAAATTCAGCTGCAGCATCATATGGTTAGACACGGAGGTGAAAAGATATTCCAATGTGAAGTGTGCAAGAAATCATATGCTAGAGCTAGAACCCTGAAGGAACACATGCGCATTCATACAAATGACAGGCGGTATGCCTGCGAAGAGAATATATCGGATCTTTTTCTATTTTTAGGACAAAACACTGAAGAAATGGATATAAAGGACGCGTCGGAAATAATGGACAAGATCAGGACTCAAGAGGACCGAGAGTCTGCCAAGGAAAGACGAGCAGCGTTCAGGAGTAACATAACTATTATCATGGAATCTTGTACTGCGTATCCGTTTAAATACAGAAAAGGAACCTATTTGTGCTACTATTGCACTAACTCCTACTTGGAACCGGAAAAACTTCGACAGCACAATCTTGATCAACATACTGACATAAAACAATTTGAATGTAAACCGAGAAAATATGAACCTTTAAAAATGGATTTTGCTACAGCGACTTGCAAAATATGCGGGATCAATATATCTAACTACGCTATGCTCAAATTTCATCTTCACGCTGAACACGACAAAGTTATAGATACCTCTCAAGGCGAGAGTGTTCTGCCATACAGCCTGAGTAAAGACGAGTACTGCTGTCAGATATGTGGCAAGACTTACGAGATGTTCCTAAGCCTGCACAGACACATGAACGATCACTACGAACATTTCATTTGTGAGACTTGCGGGAAAAGGTTTGTGACATCCCAGAGGATGGTGAATCATTCGCGGACACACGAGCGTGGATGCTTCCCGTGCAAAACTTGCGAAAATACCTTCCAATCTTATGCTTCTCTATACGCTCATGTGGCCAAGGTGCACAAATCCAACAAGAGATACAAGTGTCCGATTTGCGATGAGAAGTTTGGATCATACAAACATAGGTTAAAACATTTGAAGACTATCCATGGGCAGCAGACAGCGATATTTCCGTGCCCGTCTTGTCCTCGAGTATTTGACCTGTGCAGTCGTCGCACAGCCCATATAAAGTTCCAACATTTGCAGGAACGAAACCACGTGTGTTCCGTGTGTGGTATGAAGTTTTTCACGAATTACGAGCTACAGGAGCATTCGGTGAAACATGGCGGTGAACGGATTTTTCAGTGCGATGTGTGTAAAAAGTCGTATGCTCGCTTGAAGACATTGCGCGAACATATGCGTATACATAATAACGATAGGAGATTCTTTTGTTCCGTGTGTGGACAAACATTTGTACAGAATTGCAGCCTCAAACAGCACGTTCGTGTCCATCATCCCCAGCATTCGAAAACTGAAgtattttaa
- Protein Sequence
- MNEHINAHYQNYICDSCGKAFVSKSRFRTHVQSHEIGSFPCGECDEILETRAARIIILNCVESKVEWKQSRRKYNDRRDNAAIIIECSNASPFKWTRGTYACPYCPNEFGDFPQLKDHSCPTKHSNRMNVMCNARRHINIKIEISDLRCELCLESFDNFDIFIDHLIKAHEKPIQKEHGVGVTPYKLLHKNKIACVHCNKQFVLFNELNRHMNEHYTNEICFQCGKSFAFAHNLTSHLATHEAKKNKSSPTKSLQQSKANTSRKAYKCPYCNEYFKLYPSRMKHLREVHNVEIDYACHLCPAKFTLRNLRKKHIERMHIRNKQFGCDLCPYKFVTKIQLQHHMVRHGGEKIFQCEVCKKSYARARTLKEHMRIHTNDRRYACEENISDLFLFLGQNTEEMDIKDASEIMDKIRTQEDRESAKERRAAFRSNITIIMESCTAYPFKYRKGTYLCYYCTNSYLEPEKLRQHNLDQHTDIKQFECKPRKYEPLKMDFATATCKICGINISNYAMLKFHLHAEHDKVIDTSQGESVLPYSLSKDEYCCQICGKTYEMFLSLHRHMNDHYEHFICETCGKRFVTSQRMVNHSRTHERGCFPCKTCENTFQSYASLYAHVAKVHKSNKRYKCPICDEKFGSYKHRLKHLKTIHGQQTAIFPCPSCPRVFDLCSRRTAHIKFQHLQERNHVCSVCGMKFFTNYELQEHSVKHGGERIFQCDVCKKSYARLKTLREHMRIHNNDRRFFCSVCGQTFVQNCSLKQHVRVHHPQHSKTEVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -