Tacr023047.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:6212993-6217621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00028 0.018 16.0 1.4 1 21 108 128 106 129 0.91 2 20 0.0018 0.12 13.4 0.1 3 23 135 155 134 155 0.95 3 20 0.069 4.4 8.5 0.4 1 23 160 182 160 182 0.97 4 20 3.9e-05 0.0025 18.7 0.2 3 23 189 209 187 209 0.95 5 20 5.1 3.3e+02 2.6 3.9 1 20 212 231 212 233 0.92 6 20 0.00061 0.039 14.9 1.1 1 23 250 273 250 273 0.93 7 20 5.7e-05 0.0037 18.2 1.3 1 23 279 301 279 301 0.98 8 20 0.0056 0.36 11.9 1.6 1 23 308 330 308 330 0.98 9 20 0.13 8.6 7.6 1.0 1 23 336 359 336 359 0.93 10 20 0.0006 0.038 15.0 0.5 3 23 369 390 368 390 0.98 11 20 0.00059 0.038 15.0 0.5 3 22 509 528 508 531 0.92 12 20 6 3.9e+02 2.4 0.0 2 23 534 556 534 556 0.89 13 20 0.15 9.3 7.5 0.2 1 23 561 584 561 584 0.95 14 20 1.5e-05 0.00097 20.0 0.2 2 23 590 611 589 611 0.96 15 20 0.088 5.7 8.1 2.5 2 20 615 633 615 635 0.92 16 20 2.7e-05 0.0017 19.2 0.2 1 23 661 684 661 684 0.94 17 20 0.0034 0.22 12.6 1.1 1 23 690 712 690 712 0.95 18 20 0.037 2.4 9.3 0.1 1 23 718 740 718 740 0.98 19 20 0.033 2.1 9.5 0.4 1 23 746 769 746 769 0.94 20 20 0.12 7.7 7.7 3.9 1 23 775 798 775 798 0.94
Sequence Information
- Coding Sequence
- ATGCTGGCGTCGTTTCAGATGGAGGATGACTACGCGCGGCCTCCAGGCGTCTGCAACACTTGCATGACGGCTGCCCTCACAGCCACACACTTAAAACGGATCTGCATCGAGTCCCAACAACAGTGGTCCAGAGCCGTCAATAGTTTGTCCAAAATATACGACCCAGCTGACGACGACTGCTCCTACTACATCTTCTATGACGACGGTCAGAGTAGAGTCGTCAGAGATCAGAAGAAAATGACACAGGAAGAAGTAGTACAGAAATTAACGACTACCCAGGAAGCTTTGGAGGAGGCAATGAAGAAGCGACCGAACTTCAAGTGCAAGTGTCCTGATTGTGGAAAAGGTTACACGTCAACGGACGGGCTGAGCCACCATTTGAAAGGAGCGATGAAACAAGCTTGCGAAGAATGCGGGGAAGTGTTCACTCGAGAATTATTAGCGAAACACTTATCCAGAATACACTTTAAAGACGTTTTCGTTTGCGACGCATGTCATATGCATTTCGATGATTTTCCGGCTCTAGAGACGCACGTTGAGGTGCACTTATCAAAAAGCCAGAACTGCAACATTTGCGGCATCAGTTTCGATAATTCCAGAGCATTGCGGACGCATATGTACGCCCACACGTTATTCCATTGCGCAACGTGCAGTTTAAGCTTTGAAAATCGTGCGTGCTACAAATATCACTCGAAGCTTTGTTTTGCGAACCTCGATAAGTCGAAAATTGTTCCGAAGTTCTGCAATTTCGTTTGCGATCACTGTGGCAGCTCTTACGATAGAAAACCGTCTCTGAGAACTCATATAGTGCAGAAGCATTTGAATGTTCTTCCTTTCGTGTGTCAAACGTGCGGGAAGCGGGCTTCTACGCTCGCGCATTTGAAGTCTCATCAACAAGTTCACACGAAGGAGCGAATCGTATTTCGTTGCAGCGAATGTAGTTCCAAGTTTCGTACTGAATTAGGGTTTCAATTACACCAGCGCATTCATTCCGGGGAAAAGCCGTATCAATGTACCGAATGCGATGAATTCTTCCTCTCGGCTTCCAGACGTCTGGATCATATTAAAAGGAAGCACAAGAACGTCATTGAGAAGAGGCACGGATGCGACAAGTGTAAAGCGAAGTTTATCAGACCGTTTGAACTTAAGAAACATTATATGATGGTTCATAATTCTGGGATAACAGAAGAGACTCAATGTCCTCCAGGTTCCTGCATAACTTGTACCACTGCACTATTAGCTGCGCAGGAGTTCCGTCACCTCGTCCAGAGCTCAGTAAAACTCTGGACCACAGCCATAGAAACCATAAGCCTTATCCCAAATCCAATAACAACCGTAAAATCTCTATGTGTCGTCGTCTCCAACGAAACTCTGGGCGTCCAAATATTTAAAGACTACTACGGCGGCGATCCCAAAACTGTTGTGAATCGCTTAACAGGTCGTTCAGCTAAGAAACATGTAACGATATCTAACGATCGAAAACCTAGGAATTCTCTAGCTTTTCGCGCAGGACCTAGTTGCGGCTGCACTGATTGCGGTCAACAATTTCCTAGTCCTTATCACTTGAGCTTGCATTTGAAGAACAGCGGCCACAAAGAAGTGTGCATGATATGCGGCGAAATAGTCATGAGAGGCCAGGAAATGCAAAACCATTTGTCGGCTATCCACGAGGAGACTACTTACTTATGTCCAAGGTGTCCTTTATGGTTTAATAACGAATTAGACTTGAAGACTCACCGAAAAATGGCGCACAAACATGGTGCTTTAACTTGTGGTGATTGCGGGCGAACGTTTACGCGAAGCGGGGCTTTTGAAGCTCATTCTCAAATGCATGCTGTAAGGACTTGCAGGGCCTGTGGCAGACAGTTCACTAACAGAACTTGCTATAGACGTCACAGAGCCCAATGCGAGCCAGGCGCCAAGCCTGATAAGCAGGACGTGCCTAAAAACCGTCGCTGCAACATTAGGGACCCAGCTGTGTTTATCTGCGACTATTGCGGCAAGACTTACCAATCCCGACCTCAGTTAAAGAACCATATAATTTGGATACATATGAACGTTCGTCCTCACCAGTGCCAGTTTTGTCCTAAGCGGTTCTACACTCCTGCGAGGCTAGCTGAGCATAAAGTCGTGCATACTCGGGAGAGGAATTTTGAATGTGATATCTGCGGAATGAAATTGGTTTCTAGGATGGCCGCCATTTATCATAGACGCCGTCATACCGGGGAAAGGCCTTACGAATGCGTGGATTGTGATGAGAAATTCATTTCTGCGTCGCGGAGATCTGAGCACGCTAAGAGGAGACATAATAAGGGCTTTAGGCATCATTGCGGACAATGCGCCGCTACGTTTGTTAGGACCCATGAGTTGAGGAAGCATGAGTTGAAAGCTCATCCTGTCTCCTTGGTGGATGgtaaaactattttaaatttatga
- Protein Sequence
- MLASFQMEDDYARPPGVCNTCMTAALTATHLKRICIESQQQWSRAVNSLSKIYDPADDDCSYYIFYDDGQSRVVRDQKKMTQEEVVQKLTTTQEALEEAMKKRPNFKCKCPDCGKGYTSTDGLSHHLKGAMKQACEECGEVFTRELLAKHLSRIHFKDVFVCDACHMHFDDFPALETHVEVHLSKSQNCNICGISFDNSRALRTHMYAHTLFHCATCSLSFENRACYKYHSKLCFANLDKSKIVPKFCNFVCDHCGSSYDRKPSLRTHIVQKHLNVLPFVCQTCGKRASTLAHLKSHQQVHTKERIVFRCSECSSKFRTELGFQLHQRIHSGEKPYQCTECDEFFLSASRRLDHIKRKHKNVIEKRHGCDKCKAKFIRPFELKKHYMMVHNSGITEETQCPPGSCITCTTALLAAQEFRHLVQSSVKLWTTAIETISLIPNPITTVKSLCVVVSNETLGVQIFKDYYGGDPKTVVNRLTGRSAKKHVTISNDRKPRNSLAFRAGPSCGCTDCGQQFPSPYHLSLHLKNSGHKEVCMICGEIVMRGQEMQNHLSAIHEETTYLCPRCPLWFNNELDLKTHRKMAHKHGALTCGDCGRTFTRSGAFEAHSQMHAVRTCRACGRQFTNRTCYRRHRAQCEPGAKPDKQDVPKNRRCNIRDPAVFICDYCGKTYQSRPQLKNHIIWIHMNVRPHQCQFCPKRFYTPARLAEHKVVHTRERNFECDICGMKLVSRMAAIYHRRRHTGERPYECVDCDEKFISASRRSEHAKRRHNKGFRHHCGQCAATFVRTHELRKHELKAHPVSLVDGKTILNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -