Tacr011582.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735881.1:11657535-11661507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-05 0.0013 19.6 1.0 2 23 14 35 13 35 0.97 2 17 0.019 1.2 10.3 0.9 1 23 51 73 51 73 0.98 3 17 0.024 1.6 9.9 1.8 1 23 95 117 95 117 0.91 4 17 0.19 12 7.1 0.3 5 23 125 144 122 144 0.94 5 17 0.00021 0.014 16.4 2.2 1 23 249 271 249 271 0.98 6 17 0.012 0.77 10.9 8.7 1 23 276 298 276 298 0.97 7 17 0.00025 0.016 16.2 0.1 1 23 306 328 306 328 0.96 8 17 2.8e-07 1.8e-05 25.5 0.4 1 23 334 356 334 356 0.98 9 17 0.0034 0.22 12.6 1.5 1 23 361 383 361 383 0.95 10 17 4.2e-07 2.7e-05 24.9 3.6 1 23 389 411 389 411 0.99 11 17 0.0001 0.0066 17.4 0.0 1 23 417 439 417 439 0.98 12 17 0.0019 0.12 13.4 0.6 2 23 446 468 446 468 0.93 13 17 0.00057 0.037 15.0 0.1 1 23 474 497 474 497 0.97 14 17 0.16 10 7.3 2.8 1 19 503 521 503 522 0.93 15 17 0.0001 0.0067 17.3 1.5 2 23 534 556 533 556 0.95 16 17 0.18 11 7.2 0.6 1 23 563 586 563 586 0.91 17 17 0.011 0.69 11.0 0.4 5 20 593 608 591 610 0.93
Sequence Information
- Coding Sequence
- ATGCAGCCAGTTTTGAAGCTGAACCGTGTAAAAGTGCTACGATGCAATGAGTGCCCGAGAGTCTTCACCAGCCAGCAGAAACTGTTTGAGCATAGGAAGGTGCATATCCATATGTTCAGTGCCTACGTGTTACTGCAGCGTGCCACAGTCTACAAATGCCGCAAATGCGACCTCCTCTTCCCTCAGCTGAGGCAGATGCGAATGCATGAATTGATGCACATACAACAGAATGTAACGGAAAATAACATCTCGCACAACATCAATGACAATATTGAACGTCCCTTCAAATGTGAGCATTGCGACGCGTGCTATGTCCTCGAGAGCACACTTATCAGCCATTCTGTCCTACACGAGCCTTTCCCGAATATTTGCGAATGCGGCGTCGGATTCTATAAAACCAAGGACCTTAAATCACACAAACGATTAGTCCACCCGAAACCGACCACGTGGCAACCAAAGATAAACTACCACGGACCAAAATCGAAAAAAGAAGTCGTTGTACAACGTAATAAGTCTCCGGAACCGAGCGAAAACTCTGAAGTAAACTCAGATGTAAACTCTAGTGTCGAACCAGAATGGGAACCAGAGAATAATAAAACAGTTGTCAAACCACGGTTAAAAgcaaaattaaaagttaaaagtgcaaagaaaaatataaccTCTACGCCAATTAAGCTACATGATGTAATACTAAAGAATGACCTCGGTGAAGATGTTTTAATAGTTCAAAATGAAAACAACCTATTCTCTTGTCCAAGATGTGACAAAGAGTTTATGCACAAAGCAAAAGTCATTAAACATTATCGAATTCATACGAAACGGCGTTATCAATGCCAACTATGTCCGAAACATTATTGCAACACAACCTATTTGAAACATCACATGTACGAGCATACGGGCGAAGAACCGAGAAAATTCATATGTGATTATTGTGATAAAGGGTTTCCTGTAAAACCAAAACTTACATTACACATACTCGACCACACTGGTTACCGACCGTACAAGTGTGAAGAATGCGACAAATCGTATAGGCAACAGGTGGCATTACGAATTCATATGAACCTCCATAATTTCAAAATGTTTTTATGCCAATACTGTAAGAAAGCGTTTTCAAATGTTAACAGTAAGAACAATCATGAACGGATTCATTCAAATCTTAGACCCTACAAGTGCCAGTATTGTGTGAAGGCGTTCAATGATCCTTCATCTTTAAAGCGCCATCATCGAACGCACACCGGGGATAAGTGTTACCCTTGCGAGTCGTGTCCAATGAGATTCACGGATGTAAGCGGCTTGATCGCTCACCGACGCATTCATAAGGGAATTCgaacagaaaaatgtaaaatatgcGATTACAAGACATTCACAAGGGCTGCATTAAAAAAGCACGTTAATGCTGTACATGAAAAAATTAAGGACTTCGAATGTGCCATATGTCTGAAGAGATTTGCTTATAATAACGCACTAATTAATCATGTAAAATCTGTGCACAATAAAGTTAGAAGATTCGATTGTAAGAAGTGCAATTACAAAACTTTCTCTAAACAAAACATGAAAAAACATGTTTGGGCGAGACATAGTAATATAAAACCTAAATTGGAGTGCGAGGAATGTGGGAAAGTCTTCAAGTGTAATAATTACTTGAAAAGGCACATTAATTATGTACACAATAATCTGAAACCAAGATTTGAATGTCACGACTGTGGGATATCGGAGGAAAAAATGTTATATTTGAGAAAGCATATTATTGTGAAACACGGGACCCCTTTCTACTGCAAATGTAAGAAGTTGTTCTCGTCACAGTACGACCTTCGACAACATATGATTGAAGGTTGCATTGAGAAGTTGAAGAAATCGAAGAAAGAGCGACATAGTTCCATGGGATCAATGAAATCTAAAGGTTATGATGTCAAAATTGAGTATTGA
- Protein Sequence
- MQPVLKLNRVKVLRCNECPRVFTSQQKLFEHRKVHIHMFSAYVLLQRATVYKCRKCDLLFPQLRQMRMHELMHIQQNVTENNISHNINDNIERPFKCEHCDACYVLESTLISHSVLHEPFPNICECGVGFYKTKDLKSHKRLVHPKPTTWQPKINYHGPKSKKEVVVQRNKSPEPSENSEVNSDVNSSVEPEWEPENNKTVVKPRLKAKLKVKSAKKNITSTPIKLHDVILKNDLGEDVLIVQNENNLFSCPRCDKEFMHKAKVIKHYRIHTKRRYQCQLCPKHYCNTTYLKHHMYEHTGEEPRKFICDYCDKGFPVKPKLTLHILDHTGYRPYKCEECDKSYRQQVALRIHMNLHNFKMFLCQYCKKAFSNVNSKNNHERIHSNLRPYKCQYCVKAFNDPSSLKRHHRTHTGDKCYPCESCPMRFTDVSGLIAHRRIHKGIRTEKCKICDYKTFTRAALKKHVNAVHEKIKDFECAICLKRFAYNNALINHVKSVHNKVRRFDCKKCNYKTFSKQNMKKHVWARHSNIKPKLECEECGKVFKCNNYLKRHINYVHNNLKPRFECHDCGISEEKMLYLRKHIIVKHGTPFYCKCKKLFSSQYDLRQHMIEGCIEKLKKSKKERHSSMGSMKSKGYDVKIEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -