Tacr022712.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2954555-2960593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 0.66 11.1 4.1 1 23 84 106 84 106 0.97 2 23 1.5 99 4.2 0.0 3 23 135 156 133 156 0.91 3 23 0.0068 0.44 11.6 1.5 2 23 177 199 176 199 0.95 4 23 0.0011 0.07 14.1 0.3 1 23 204 227 204 227 0.96 5 23 0.00018 0.012 16.6 0.3 1 23 232 254 232 255 0.96 6 23 0.0086 0.55 11.3 3.0 2 21 258 277 258 280 0.95 7 23 0.13 8.6 7.6 1.8 2 22 287 307 286 307 0.94 8 23 0.00036 0.023 15.7 1.1 1 23 362 385 362 385 0.95 9 23 0.0052 0.33 12.0 0.1 2 23 457 479 456 479 0.95 10 23 0.00037 0.024 15.6 0.9 2 23 485 507 484 507 0.93 11 23 0.051 3.3 8.9 2.1 2 23 512 534 511 534 0.94 12 23 0.0018 0.12 13.4 3.0 1 23 539 562 539 563 0.96 13 23 3.5e-05 0.0023 18.8 5.2 1 23 566 589 566 589 0.97 14 23 0.00071 0.046 14.7 0.3 2 23 596 617 595 617 0.96 15 23 1.2 76 4.6 0.2 1 23 674 697 674 697 0.94 16 23 0.2 13 7.0 2.4 2 23 775 796 775 797 0.94 17 23 0.00091 0.058 14.4 2.5 1 23 802 825 802 825 0.97 18 23 1.3 81 4.5 0.7 1 23 830 853 830 853 0.91 19 23 0.069 4.4 8.5 1.3 2 23 859 881 858 881 0.92 20 23 6.4e-05 0.0041 18.0 0.2 2 23 889 911 888 911 0.97 21 23 0.0022 0.14 13.2 0.3 2 23 918 939 917 939 0.96 22 23 4.5e-06 0.00029 21.7 0.8 1 23 945 967 945 967 0.98 23 23 0.027 1.7 9.8 1.7 1 23 973 996 973 996 0.95
Sequence Information
- Coding Sequence
- ATGTTACTCGCTAAAACCCCTTCGATGGCCGACCTCGTGCTGTTCGAAGGGTTCCGGAACTACCTACGGAACGCAGCAATGCTTCCTAACACTTATCAGAGGCCCGTTAACGATAGCATGAAGAAACATTTGTTTTCAGATGAATATCCGCCAGGCCCGTACGACGGCTATACCTCTGAGCGGAGACGGAAAAACTTGCAAATACTGTTCAACAACACCACTATAATCCCTTTCAAATGGCGCGGCAGGTACATATGCTTCTACTGCGGCAAAAACTACAGCGGACACCCAGACTTTAAGAAGCACACCAAATTCCACGGACCATGCACCACGAAGGACCACTCGTTGAAAATTATAAAAGGGAATCACATAGAAATAAAGATAGACGTGTCAGAGATCGCTTGCGAAGTTTGCAACGAACCTTTTGGGAGTTTCAACGAAATTGTCGATCATTTGATCGTGAAACACGGCTTTGAATACGATAAAAGTGTCGACATACCGCTCCAAGAATACCATTTGGCGGATTGTCGATGTTTATTTTGCAATCAACAATTTACGTATTTCGGTGCTTTAATCACTCATATGAACGTGGCTCATCCCAAAAATTGCTTCGCGTGTGACGACTGTGGAGTTTCTTTGAATAAGAAGAGAGACTTGGTGACACATTTGAGGAATTATCACCGAAAGGGGGGATATCCATGCGGACAATGCCCGGAAGTCTTCGAAACGAACGGTGCGATGCGCTCACACCAAAACAGCCATCATTTCAGGAAATGCAAAAGCTGCGGTCAAACTTTTGCATCTTTTACGTTACTGCAGAAACACATTCAATGCGACCATCCCGACGACGGTCGTCTGAAATGCAGTTACTGTGATAAACAATTACATTCAAAACAAGGTGTTAAACAGCATTTGAGGAAATGCAAGGTCAGAGTGGTAGCTCACGGCAAACCGATAGATACTACCGCATTCTCTTCTGAAAGCATTGTACCTAAAAAGAAACAGAATCTCGTTCAGATCCGACAAAATATAGCGTGTGTTCTGAACTTGTCCACAGCAGTACCTTTTAAgtttttctccaaattttccTGCTTTTATTGTTCCAAAAAGTTTCCCGATTTCGACGAGCTTAAAACGCATACGATCGTAGAGCATCCTATTTGTGACTTAACGTTAAAAGCTATTAAGAATTGCAAAGGCGAACGGAGGAcggttaagatcgatataactGGTTTGGCTTGTAAAGTGTGTCGTCAACCTATGGATGATTTAGATGTCTTATTAGATCACATAATCACAAATCACGAAGCGAACTATGACAAATCTATCATTTGTCTAGAACCTTTTAGGATTATAAAGGACAATATACCTTGCCCAATATGTCCACAAGTTTTCAGATATTTTACCATATTGCAAAGGCACATTAGTTCGGAACATAGCGGTAATAACTGCATATGCGATTTCTGCGGCCGAAGCTATAAAAACGTTGCAAATTTAAACGTACACATATCTTATTCTCATACTGGGGCTATAGAATGTGATATGTGCTCGAGCAAATTCAGAAATCAATGGTGTCTTTTGAGACATAAAGCGAAACTACACGACGCAAAGGACTTTAAATGCCCGAAATGCCCGGAAATGTTTCAATCCCAATACTACAAGcagaaacatttaataaaagtCCATCATGTAGGTCACAAGTGCTCGTTCTGTGGTAAAATGTTTACGAGAAACTCGTTTATGAAGGATCACATTAGGAGGACGCATTTGAAAGAGAAAAACGTACCGTGTTCTATTTGCAGCGAGAAGTTCTTTGATAATTATTTGTTGAAATTGCATATGGTTAAACATGAGGGCGAGAGAAAGTTTATTTGCACAGTTTGTGGTGCAAAATTGAATACAGAGGAACTCAAACGTAAGAAAATGGAAGAGTCCCGCAAGTTGCTCATTAAAAGACGGAACGTTGAATACGTTTTACTTTATAGCAACGCTACTCCCTTCGTATGGTGCAAGGGCAAGTTCGCATGCTTCTACTGCTCGGAACATATCCAAGACCCCGTGGCTCTGAGAGACCACACCGCCAGAGTGCATCAGTTCGCAAATCTAGAACTCGTAGTCAACGATCGGATCAAGAATAACAGAGACAAAGATGCCGCAATCAAAATTGATGTAACAGATTTGATTTGTTCACTGTGCCCCGAACAAGTCATTGTACCTAATCTGGAACAGTTGTTGCACCACCTCATCATAACTCACGACGCAGAGTACGATATGAGCGTCCCAAACTGCATGCTGCCATTCAAGTTAGACAAAAACGAACCGACTTGCGGCACTTGTAACATGAAATTTGGATTCTTCGAATACCTTCTAAGGCATGCGAATAAGCATCATCTGTCACATGATTATATGTGCGATACTTGCGGGACAAGTTTCCAAGGAGAGAATCATCTGAGAATGCATCAACGGTACTACCACAAGGAAGGTGGTCATTCGTGTCGGTATTGCGGGCAAATTCTGGCAACGTTATCCAAGAGACTTGTCCATGAAAAGAATGCGCATTTAGCGAGGTTGCTGACCTGCCCTCATTGCCCAGATACCTTCAAAAGCACTTACAACAAGAAGTTGCATCTTGCAAACGTTCACGGCGTGGCAGAGTTACAAATCAAATGCCCTTATTGTCCGAAAGTGTTTCCGCAGGAGAGCATAATGTCGCGGCACATGAGACGAGTACATTTGCGAGAGAAGAACGTCGAATGCGAAGTGTGCAAGGAGAAATTTTTCGGCAACTACGACTTGAAATTACACATGGTTCGCCATAGCGGCAACAAGATGTTTACGTGCGAATATTGTTCCAGAAAGTTCTCCAAGAAGGGCAATCTTATTAGCCACATTATTATACATACTGGGGAAAAGAAATATATTTGCGAAATATGCAAGAAGCCGTATGGACATCTGCAGAATTTGAAATTTCATATCAAGAATCAACATCGAGTGATTAAGGACCTTGAGGGCATAGTTGATGATGAAGAGGGAGACATAATTCAATTGGAGTTCATTGGCGATGAGTTGGAGGGTACTGAGCTTACTGGACAGTATGTGCAGTGA
- Protein Sequence
- MLLAKTPSMADLVLFEGFRNYLRNAAMLPNTYQRPVNDSMKKHLFSDEYPPGPYDGYTSERRRKNLQILFNNTTIIPFKWRGRYICFYCGKNYSGHPDFKKHTKFHGPCTTKDHSLKIIKGNHIEIKIDVSEIACEVCNEPFGSFNEIVDHLIVKHGFEYDKSVDIPLQEYHLADCRCLFCNQQFTYFGALITHMNVAHPKNCFACDDCGVSLNKKRDLVTHLRNYHRKGGYPCGQCPEVFETNGAMRSHQNSHHFRKCKSCGQTFASFTLLQKHIQCDHPDDGRLKCSYCDKQLHSKQGVKQHLRKCKVRVVAHGKPIDTTAFSSESIVPKKKQNLVQIRQNIACVLNLSTAVPFKFFSKFSCFYCSKKFPDFDELKTHTIVEHPICDLTLKAIKNCKGERRTVKIDITGLACKVCRQPMDDLDVLLDHIITNHEANYDKSIICLEPFRIIKDNIPCPICPQVFRYFTILQRHISSEHSGNNCICDFCGRSYKNVANLNVHISYSHTGAIECDMCSSKFRNQWCLLRHKAKLHDAKDFKCPKCPEMFQSQYYKQKHLIKVHHVGHKCSFCGKMFTRNSFMKDHIRRTHLKEKNVPCSICSEKFFDNYLLKLHMVKHEGERKFICTVCGAKLNTEELKRKKMEESRKLLIKRRNVEYVLLYSNATPFVWCKGKFACFYCSEHIQDPVALRDHTARVHQFANLELVVNDRIKNNRDKDAAIKIDVTDLICSLCPEQVIVPNLEQLLHHLIITHDAEYDMSVPNCMLPFKLDKNEPTCGTCNMKFGFFEYLLRHANKHHLSHDYMCDTCGTSFQGENHLRMHQRYYHKEGGHSCRYCGQILATLSKRLVHEKNAHLARLLTCPHCPDTFKSTYNKKLHLANVHGVAELQIKCPYCPKVFPQESIMSRHMRRVHLREKNVECEVCKEKFFGNYDLKLHMVRHSGNKMFTCEYCSRKFSKKGNLISHIIIHTGEKKYICEICKKPYGHLQNLKFHIKNQHRVIKDLEGIVDDEEGDIIQLEFIGDELEGTELTGQYVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -