Tacr022703.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735898.1:2876249-2880289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.001 0.065 14.3 0.2 1 23 28 51 28 51 0.95 2 24 0.31 20 6.4 0.2 2 23 77 99 76 99 0.95 3 24 0.00083 0.053 14.5 0.3 1 23 148 170 148 170 0.97 4 24 0.01 0.65 11.1 0.1 1 23 177 200 177 200 0.97 5 24 0.0046 0.29 12.2 1.4 2 23 208 230 207 230 0.94 6 24 1.7e-06 0.00011 23.0 0.9 2 23 236 258 235 258 0.97 7 24 4.6 3e+02 2.7 1.1 1 23 264 287 264 287 0.86 8 24 0.58 37 5.6 0.2 2 23 391 413 390 413 0.94 9 24 0.0021 0.13 13.3 0.1 2 23 436 457 435 457 0.97 10 24 0.0017 0.11 13.5 0.3 1 23 461 483 461 483 0.98 11 24 0.0016 0.11 13.6 1.4 2 23 489 511 488 511 0.96 12 24 0.025 1.6 9.9 0.4 2 23 518 540 518 540 0.95 13 24 2e-06 0.00013 22.8 0.4 2 23 547 569 546 569 0.96 14 24 0.00051 0.033 15.2 1.7 1 19 575 593 575 596 0.95 15 24 0.026 1.7 9.8 0.1 1 23 625 648 625 648 0.94 16 24 6.5 4.2e+02 2.3 0.1 2 23 674 696 673 696 0.87 17 24 0.0094 0.6 11.2 1.9 1 23 718 740 718 740 0.98 18 24 0.25 16 6.7 0.1 1 23 744 766 744 766 0.95 19 24 0.0031 0.2 12.7 1.1 1 23 771 794 771 794 0.97 20 24 0.031 2 9.6 2.0 1 23 799 822 799 822 0.92 21 24 0.024 1.6 9.9 0.6 2 23 830 852 829 852 0.94 22 24 0.0081 0.52 11.4 5.0 1 23 858 880 858 880 0.96 23 24 1.9e-06 0.00012 22.8 1.4 1 23 886 908 886 908 0.99 24 24 7.8e-05 0.005 17.8 3.5 1 23 914 937 914 937 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAGCAGTGGCACAATCTGACTACCTTGCTGAAATACTCAAATGCAACACCTTTTAAGGATAGAAACGACGCTGGATACATTTGTGCCTACTGCTTCAAAACATTCCCAGATCCAGGTGTCTTAAGAAGTCATACCAATAATGACCACGTTAAGGAAAAACCTACTTATAAAGCCGGATCAGGGATGGCCAGCTTCGTAGCTTTCCTGGACGTAGTAGATCTCAAATGCACTGTATGTGATACACCAATGGAAAGCCTAAATAGTTTAACCGAGCATCTAGTCACAAAACACGATAAGAAGTATTATTTAAACCTAACAGATTACTTTCAACCATTCAAACTTACAAATGAGAAACAGAACCACTGCTGTCTATGTAGCGATGTGTTTCATAACATGAAGTTACTGATGCAACACATGAATGTACACTATAGGAACTTCATATGCACCGTATGTGGTGCAGGCTTCGTGAATAGCTTCCGACTGAACAGACATGAGACGACACATGGAAAGAAGAAGACCACTTACCCCTGTAGACAGTGTGGACAAGTTTTCGCAGCGGAATCGAAGAAGAAAGCCCACGTCAACACAGAACACAAAGGCATAGCAGGGGACAGCGTTTGCCAAATCTGCAAAGCGAGATTCAAAAATTATTACCAGAAAACGCGTCATATGTCTCAAGTGCACAACGTCGAAGGCATTAAATGCGATATGTGCGACAAACGATTTAATCTCAAATCTAATTTGATGTTGCACATGCGTAGTGTTCACCTGAAGGAACGGCCGTTTGAATGTTCTGTTTGCTCCATGGGGTTCTTCATAAAACGTCACATGGTCGGCCATTATGTTTCAACACACACGAATGAGAGGAAGTTCAAATGTGTCACCGGGAAAGTATCCAAAGCATCGCTGAAGCGAGCTCGACGCGCAGAATTAGATATCATGAGGAAGCAAAAGCAGAATCTTTGTAAGATACTCATGAGCTCTAATGCGAACCCGATCAAATCTAAGGATACTACTGGTATCCAATGCGGGTACTGCAGTGTCGTAATGGAATCGAAATCGCTAAAAGAACATTTCATCACAACTCATAGAGATGAATCTTTAATAAAAGCCAGGACTCAAACACTGTCCAAGATCGTAGTGAGATTAGATATTACCGACTTAACATGTGACTTGTGTGACAAACAAATAAACACATTAGAACGCCTAGTCGGTCATCTGCAGAGCAAACACGACATTGAAGTTTATCCAGAAGTAGACAACGTTTTTCTCCCATTCAAATTCGACGCCGGCTTAATGCGATGCGGCATTTGCGACCAACCATTTCCAGTTTTCAAGATGCTTAGAGAACACATGAATTTACATTTCCGGAATTACGTTTGTGACATTTGCGATTCCGGATACGTTAGCAAGGAATTGCTTTACCGCCATAAGTTGCGTCACGGTGGCACAGAGGTTATGTGCTGTTATTGTGACAAGTTGTTCGCAAGTCAAGAACGTATGAATCGTCATATACAAACTGTTCACTTTGGAGTCAAGAAAAACGTTTGCAAATATTGCGGTGAACGATTCGGTGAATTCAATCAGAAGTTGAGGCACATGGAAATGGTCCACAATGTCAAAATGGATTTGCAGTGTTCTGTTTGCGAGAAATCGTTTAGGACACCCCGTGCTTTAAGGGTGCATCTCAGGAGAGACCATCTTTTGGAGAGAAACTACGAATGCGGGCATTGTAAAAAGCAGTTCTACTCCAAAGATGAACTGAAGTCTCATTCGGTCACAGACGTTATGAAACATCGGCATAATGTTCGGCAGATTCTACTGTATACGAACGCGACGCCGATCCGACATCACACAGATGCGGGCTATGCTTGCGGCTTTTGCTCGGCCATCTATTCAAACCCAGCTGACCTCAAGCTCCACACGCTAAACGAACACGACGATAGTAAACTTGAATATACATCTTGTACGGGCATGACTTCGTTCGCACCCAAGCTCGATATTACTTCACTAGTATGCAAGATATGCAATGCCAATATCGACTCATTAGAACAAACATTTAAGCATTTGGCAAATGATCACAATCAGACTATAAATACTGACGTTAAGAACCACATCCTAACATTCAAATTCGATGACGAAGAATTCAAATGCGTTCTTTGTTCAACCACAACGCCACATTTTAATTCGCTTGTGAAACATATGAACATACATTACAGAAATTACATATGCGATTTGTGTGGAGCAGGCTTCGTAAACGAAGTAAGAATCAGACTGCACAAGAAAAATCATGAATTGGGTACCTttgtctgtgattattgctCAAAAGTTTTTGATACGATCGGCAAGAAGAAATCTCACGAAAGAACCAGCCATTTGAAGTTGCAATACAAATGCTGGAAGTGCAATGAGAGATTTAGATCGGACCGACATAAGCGGATCCATTTGGCTGAGGTGCATGGCGATGCCGGAGCTTCGATACCTTGTGAGGTGTGCGGGAAATCCTTTCTGCGGGAATATTTATTGGACTGTCACATGAGGAAAGTACATTTGATCGAGAGAAATCACAAATGTGACCAATGCTACATGGCGTTCTTTACAAAGTATCAATTGAAGAAGCATAATATAAGGCATACTGTAAACAAAGAGTTTAAATGCGATTACTGCTTGAAAACGTATGCTCGGAAAAGTACTTTAACGGAGCATATTCGCATCCATATGAATGACCGTAGGTTTGTGTGCAATCATTGCGGCCAGGCGTTTGTTCAGAATTGTAGTCTAAAGGGACATTTGCGTAGCAAGCATGGAGTAGACACTGCCTAG
- Protein Sequence
- MKKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTFPDPGVLRSHTNNDHVKEKPTYKAGSGMASFVAFLDVVDLKCTVCDTPMESLNSLTEHLVTKHDKKYYLNLTDYFQPFKLTNEKQNHCCLCSDVFHNMKLLMQHMNVHYRNFICTVCGAGFVNSFRLNRHETTHGKKKTTYPCRQCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMSQVHNVEGIKCDMCDKRFNLKSNLMLHMRSVHLKERPFECSVCSMGFFIKRHMVGHYVSTHTNERKFKCVTGKVSKASLKRARRAELDIMRKQKQNLCKILMSSNANPIKSKDTTGIQCGYCSVVMESKSLKEHFITTHRDESLIKARTQTLSKIVVRLDITDLTCDLCDKQINTLERLVGHLQSKHDIEVYPEVDNVFLPFKFDAGLMRCGICDQPFPVFKMLREHMNLHFRNYVCDICDSGYVSKELLYRHKLRHGGTEVMCCYCDKLFASQERMNRHIQTVHFGVKKNVCKYCGERFGEFNQKLRHMEMVHNVKMDLQCSVCEKSFRTPRALRVHLRRDHLLERNYECGHCKKQFYSKDELKSHSVTDVMKHRHNVRQILLYTNATPIRHHTDAGYACGFCSAIYSNPADLKLHTLNEHDDSKLEYTSCTGMTSFAPKLDITSLVCKICNANIDSLEQTFKHLANDHNQTINTDVKNHILTFKFDDEEFKCVLCSTTTPHFNSLVKHMNIHYRNYICDLCGAGFVNEVRIRLHKKNHELGTFVCDYCSKVFDTIGKKKSHERTSHLKLQYKCWKCNERFRSDRHKRIHLAEVHGDAGASIPCEVCGKSFLREYLLDCHMRKVHLIERNHKCDQCYMAFFTKYQLKKHNIRHTVNKEFKCDYCLKTYARKSTLTEHIRIHMNDRRFVCNHCGQAFVQNCSLKGHLRSKHGVDTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -