Tacr023174.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- -
- Assembly
- GCA_963506565.1
- Location
- OY735899.1:1330823-1333225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5e-06 0.00032 21.5 4.2 1 23 7 30 7 30 0.95 2 21 0.0028 0.18 12.8 1.2 2 23 36 58 35 58 0.94 3 21 1.2e-05 0.0008 20.3 0.2 2 23 67 89 67 89 0.97 4 21 5.3e-06 0.00034 21.4 2.2 2 23 98 120 97 120 0.95 5 21 0.00015 0.0095 16.9 1.9 2 23 128 150 128 151 0.95 6 21 7.6e-06 0.00049 20.9 2.0 2 23 158 180 157 180 0.94 7 21 6.4e-08 4.1e-06 27.5 0.6 1 23 186 209 186 209 0.98 8 21 0.17 11 7.2 0.4 1 23 217 240 217 240 0.94 9 21 7.1e-05 0.0046 17.9 0.4 1 23 264 287 264 287 0.95 10 21 0.0001 0.0065 17.4 1.6 1 23 321 344 321 344 0.97 11 21 2.9 1.8e+02 3.4 0.5 2 21 352 371 351 372 0.92 12 21 0.042 2.7 9.2 2.6 2 23 381 403 381 403 0.95 13 21 0.071 4.6 8.4 5.2 1 23 426 449 426 449 0.96 14 21 7.3e-06 0.00047 21.0 0.6 3 23 457 478 455 478 0.96 15 21 7.8e-05 0.005 17.7 2.6 2 23 485 507 484 507 0.94 16 21 0.0025 0.16 13.0 3.9 1 23 513 536 513 536 0.98 17 21 1.6 1e+02 4.2 4.9 2 23 544 566 544 566 0.94 18 21 0.00075 0.048 14.7 0.1 1 23 573 596 573 596 0.98 19 21 0.031 2 9.6 0.7 1 21 603 623 603 626 0.88 20 21 0.021 1.3 10.1 2.7 3 23 641 662 640 662 0.91 21 21 6.5 4.2e+02 2.3 0.1 2 17 683 698 682 699 0.89
Sequence Information
- Coding Sequence
- ATGTTTTCTGGCTTAGATTTCGTTTGCGACTACTGCAGTCGAACTTTCACAAGGAAATATAACTTGCAGACTCATATCGAGAACTGCCATATTAACTCATCATGTTGCTGCGATATATGTGGCCAGAACTTCGGCAGCCCCGCAGGACTACAGCTTCATTACAGCAGAGGCCACAACCGATATGACCAGCCCAATCCAGAATGCGATATTTGCGGCCGAATCTTTACTAGAAAACAGAACATTATGTCTCATATGATTACAGTCCATTTGCAAGGTGTCGGACCGGCTATCCGATGCAAATATTGCTATAAAGTCTTCACTACTACGAGGAATCTCAAACGGCATATCAACCAGCTTCACAATCCCGATGTCAAGTATCCAACATGTAACGAATGCAACAGAGTGTTTAAAGGAAAACATTCGTTAATAGTTCATATTGAATCCGCTCATCATACTGTTAAAGATATAATAAAATGCCACCTTTGCGATAAGGTGTATACTAATAACAGAAATCTGAAGCGACATGCCGAAATGTATCATGGCGAAAAAGGTGAATTTAAGTGTGATATATGCCCTAAAGTTTATACTTCTAATCAGAGTCTCCGAAGGCATATACGCACAGCTCATTACACTGATAATCAAGATGAATATAAATGCGACTTTTGTCCTAAGATGATATTAGGAAGAGAAAACCTGGAAACTCATATACAGTTTTACCATAGATCtgaaaattcaaattcttttgaTTGCAACGACTCGTTGAGTCTTGATACTAAGCTAAAATACAATTACCCTTGTGAAGAGTGCGGCAGATGTTTCCAAGACGAACCGTCGCTCCGACAACATGTTAAGGCGGACCATTCGTTTAATACTTTCTACAAATACTGTAGGAATTCTCTTTTAAAACAGATGTCGATCACTGAACAATTCCTAGATAAACACAAGAAACATAATGTATTTTACAATTGTGAATACTGTCACAACGCGTTTAGTTCTATCTACGAACTTAAAGACCACATGAAAATAAACCACGACAGAGACTATTGTTCATCTACCTGCAACGTATGTTTCGGGAACTTCTACAGCAAAGAAACTATGTTCGAACACAAAAAGATATGTCTGCCACCACCGAACGTCAACTCTTGCAGCCACTGCAATAAACTATTTACAGATATATCAAGCCTCGAGTTTCACACTCGAATTTTTCATCCTAGAGCTCAGATAGCCGATTCCAATATAACATCGACGATTATTGAGGAATCTGACACTGGCTGTTATAAATGCATACATTGCGACCGCGTCTACTATAGCGACAGATCTTTGAAGCatcatataaaattaaaacatacaACAGAGCAAGCTATGGATTGCGATATCTGTGGGAAAGTATGCagcaataaatattacttagcaTCGCATATTAAAATGGTACACACTAACAATTCTTGGTCGAAATGCGATTACTGCGAGAAAAAGTTTAAATCAAAGAGAAATATTCGACGACATATTGAATATACTCATTTGGGTATGCAGAGGCACAAGTGTGTGGAATGCGAGACGCTTTTTAAAGAGAAAAGGAGTTTACGTAAACACGTAAGGACGAAGCATCCAAATTCAGCGTCATTCCCTCAGTGTCACTTCTGTTACAAGCGTTTCGAATCGGCGAAAGCATGTAAAATACATTTGAAACTTCTGCATTCGTTCAATATGAATACTTACCCATGCGATTTATGTTCAGTCTCTTTTAGTTCAGACGAAGCcctgaatttacatttacaaacaaaacatttaGCTGAAGACGCAATTTTTAAATGCGAGGAGTGTAATGTCGTGTTTAGAGGACAAGAGAAATTCGATCAACACAACGAACTGTATCACGTTAATCTGCTTCCTAGCGTGAAGCAGAAACTCCTGCCTCGTTGCATCATTTGCATGAAAGATTTTAGCACGAGAAAGACTTTGAAACGTCACATCAAGAAATTCCATGAAGGATTTGATGTCGATGAACTAGCAACATTTGGATCTCGAAAACGCGTGTTCGGTGTTGAATGCGAGGACTGCATCAAGAATTTCAATGACGAATACCACTACAACATATACATGAAGATGAAGCATGTACGCGAATCGATAATATTCAAATGTGAAACATGTTATTCTTCGTACAACTCTTTAGAATACTCGGTTCAACGGTATAAGTTGACAAATTACGAGCTTTCCAAAAGTAAGATGATTCTAAGTGAGTTGTGTACGGCTGAGATGAGCGATGATGAGGCTGGTTACTCAGGGTTTGGGTCTTTCCATGAATTAATGGAGCCAGAGAGCACGACTGTTGATATAAAGATGGAAATAGAATCCATGGACATTTTAGAGAGTGACATTAAGGCTGAACCTATGTCGCCATAG
- Protein Sequence
- MFSGLDFVCDYCSRTFTRKYNLQTHIENCHINSSCCCDICGQNFGSPAGLQLHYSRGHNRYDQPNPECDICGRIFTRKQNIMSHMITVHLQGVGPAIRCKYCYKVFTTTRNLKRHINQLHNPDVKYPTCNECNRVFKGKHSLIVHIESAHHTVKDIIKCHLCDKVYTNNRNLKRHAEMYHGEKGEFKCDICPKVYTSNQSLRRHIRTAHYTDNQDEYKCDFCPKMILGRENLETHIQFYHRSENSNSFDCNDSLSLDTKLKYNYPCEECGRCFQDEPSLRQHVKADHSFNTFYKYCRNSLLKQMSITEQFLDKHKKHNVFYNCEYCHNAFSSIYELKDHMKINHDRDYCSSTCNVCFGNFYSKETMFEHKKICLPPPNVNSCSHCNKLFTDISSLEFHTRIFHPRAQIADSNITSTIIEESDTGCYKCIHCDRVYYSDRSLKHHIKLKHTTEQAMDCDICGKVCSNKYYLASHIKMVHTNNSWSKCDYCEKKFKSKRNIRRHIEYTHLGMQRHKCVECETLFKEKRSLRKHVRTKHPNSASFPQCHFCYKRFESAKACKIHLKLLHSFNMNTYPCDLCSVSFSSDEALNLHLQTKHLAEDAIFKCEECNVVFRGQEKFDQHNELYHVNLLPSVKQKLLPRCIICMKDFSTRKTLKRHIKKFHEGFDVDELATFGSRKRVFGVECEDCIKNFNDEYHYNIYMKMKHVRESIIFKCETCYSSYNSLEYSVQRYKLTNYELSKSKMILSELCTAEMSDDEAGYSGFGSFHELMEPESTTVDIKMEIESMDILESDIKAEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01401482;
- 90% Identity
- iTF_01401482;
- 80% Identity
- iTF_01401482;