Truf072020.2
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932245.1
- Location
- OZ010748.1:84540642-84584697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.095 25 7.9 0.1 3 23 272 293 270 293 0.89 2 15 0.0072 1.9 11.4 0.2 1 23 347 370 347 370 0.97 3 15 1.4 3.8e+02 4.2 0.4 1 23 408 430 408 430 0.95 4 15 0.00063 0.17 14.7 1.8 1 23 462 485 462 485 0.98 5 15 0.00068 0.18 14.7 4.6 1 23 488 511 488 511 0.96 6 15 0.036 9.4 9.2 2.6 2 23 518 540 517 540 0.95 7 15 0.0031 0.81 12.6 4.4 1 21 616 636 616 637 0.95 8 15 0.0066 1.7 11.5 1.4 2 23 649 671 648 671 0.91 9 15 0.11 29 7.7 0.6 1 23 674 697 674 697 0.95 10 15 0.024 6.4 9.8 0.3 3 23 704 724 702 724 0.93 11 15 1.1 2.9e+02 4.6 0.4 2 23 758 780 757 780 0.94 12 15 0.14 36 7.4 0.9 2 23 789 811 788 811 0.94 13 15 3.4 9e+02 3.0 0.0 3 23 818 839 817 839 0.89 14 15 1.2 3.1e+02 4.5 0.2 2 23 980 1002 979 1002 0.92 15 15 0.27 71 6.5 0.9 1 23 1015 1037 1015 1037 0.96
Sequence Information
- Coding Sequence
- ATGATTAACTACCCTGGTTCTGTATTTTTGAGTAAAGAAGATTTAAAGAAAGTGTACACTGCATGCCATGCTGAGAATCAAGTATCCCAACATTGTCTCCTCCCCGATACGATATGTTCAAAATGCCACGAAAACGTCAACAGTTTCTACGGCTTTGTCAAGAACTGTCTACAAAGCATCATCATCCTCGAGGCCCAATACGACGTCACAGAATCGTGTTTGCGGACGCGACGCAAACACGATAAATCATGCTCCACCGATTTCCCACCACGCGAACAATCTACCTCCATCCAACCAACCAACACATACTTACCACAGGATGACATCTACAGTCCAACATATACCAAGACGAAACTACAAAATTTCGCTCGAACTTTGGCTGACGCCGAACGGAATCTCTCATCACCTCAACAACTTCCTCAATCGTGTAAGATTGTCAATTATGACAGTAGTTCTGATGATGAAGTTGTGCAGTTACCAactaatatcaataataaactttattttgatgaTAAGGAGAACGATTTGATTAATGAGATTGCTGAAAGAAAATCGTTGAAGAGGAAATCTGATGATGTTATCCATCATAGTCAACCGAagatttgtaaatttgataCGAATAGGAGGAAACGAAGGCCGCCTGTTAAAGTTGAGAAAGTTGTGAATAATGATAGTGCTTGGAATTTTAATACGTTGGAACAGATTTATGATGAGATACAAGTTAAGCAATTGAAGGAGGAAGTTATTGAGGAGGTTGATGAAGGTGTGCAATGTATGGAGCAAGAAGAAGCGATACCTAGTTTACCACAAATATGTCTTCTCTGCGATACGCAATTTGCCGGACCTTCACAATTGGCAACACACGTTTTCGAGACGCATGGAATTGATATGGCTCAGGTAGTATCCAACGAGCCGATACttgaaaagaagaagaagattccTAATCTTGTGAAGATTGCCGACTTAAAACACAAACGAGATTCACAAGAATCAAAACTACAAGAAAACGGCGAAGAACCACCGACGCTCGAACCGAGTTACGTGTGTCCACTATGTCCGGCTtccttaacaataaaaaatgatctCTTCCAACACTTACGACAAAAGCATCAGGGCAAAGCCCACCTCTTATGCGGTCTGTGCTTATTCATGGCCACCTCCTACTTGAATTTAACCGATCATCTTGCGGCGTGCGTACAGAGGCATCCGATATCCAATCCGTACATATGCAAAGTTTGCAAATACAGCGATGACAACCAGAAAAACACGGAAAACCACGTATTAGTCCacgattttataataaacttctGCAAAAAAGAAGGCAAAATATTTGACCCAGCTGATTATATAGAGCTCAATTTAGCCTGTGATTCCCCGAAACTGTACACGTGTACGGAATGCGGATCTTCGTTTGTTTCCTTTAAGGATTTCTCGACTCATAGACGATCCCTACATTCTATTTTTCATTGtgatttatgcaataaattttatggaCGCAACTCGCATTTATGGAAACATGTTAACCGGCTCCATAAAGGCCACCCGTCAATCACCTGCCAATTCTGTTATAAAACGAGCGCCTCGAAATACCATTTGGCGcaacatttcaataaaatccataCGGTTAAATCGGGTAAATTAAAGAATGGCGATGTTGAAGAGGaagattttatgaataaaaaattcgAAGCCTTTGATTTTCAAAGCGTTCGACAAAGTTTCATGCGGCAGGAATTAGCGAAAAAAGAGGAGGAATCTGTAGATGTTCCGAAAGAAATCGATACGAGCAGCAATTTATATACCAATATAATAACCAATTATACTCCGCCGCAAAATAATGGCGAATTTAAGTGCCCCAAATGTTCGAAAGGATTCCATAAGAAAAcgttacttaaaaaacataaaaagaattGCCGACCGAGGTTACAAAAAGATTTACTAACACGTTGCAAATCCTGTTCGAGGATATTCAAAGACCGACAGAGTTTGGCGAAACATTTGGTTAATTATCATAGCGAATACGTTTGCGAAATATGCGATGAAAAGGTGCAAAGTAAATGTGAAATTGTTTCACATATACGATTCAGCCATCCGAGCTGTCAATTATTCTGTCAGGATTGCGGTAATGTATTACGTAATCAAAACGAGCTTCGTATTCATTCACAAGACCATGCTAATTCATTCGTCTGCCAATTCTGTGCTGACTTATTACCGAGtaagatcaaattaaaaatgcacATATTAAGTCTGCATAGAAAAATACTCAGTCTTAGTTGCGGTGTTTGTTTAAAGCTATTTGAAACGCAACATATACTCAGGGATCATGTCCGATTGGTGCATCGTGATGTTTTATTACCACTAACATCGTGTACTGTCTGTGGGAAAAATTACGGATCGAAATGGAAAACGTATGATCATCTTAATAAATCACATGGGAGAATATTCAAGGCGTGTAAGGCTTGCTTGGAGGTGTTTGATACCGATGGGGATTTGGAGGTGCATTATGATGCGGCTCATGGGAATGTGCCGAAGGAGAAAGCAGGGAAGAAAGAgATTCTACCAAAAAAAGAAGTCGAAGTCTATGAAAGTGAACCAGAACAAGATGAAAAGAATTCATCATCAGCTGAAGAAGAAAGCGCATGTGAAGAAGAACAACCACCCTCAAAAATCTCCCTTCTAGAAAAACGTCTAACATTACCGGCAACTATTCCCGATTTAGTAACGCCATCGAAACAATCGACAcctaaaaagaaagcaaaaaaatcgaCCAAACAAGAGGATTACACGCCCGATCAAAATGGTGCTAACAGTTCGAAACGAACCGTCTACGTCAACTCCAATGATCCTTCGTTAtgtgaaatttgtttaaaaacgtgGCCGGCTAAAAAACATCTATGGCAACATTACATCCGATGCCATAAACTTGTAGCGGCAACCGTTTGCGGAATATGTTTAAAAACGAACGATAGCTACGAAatgcttcaaaaacatttgaaggAAGTTCATCCGACTTTATTACACGGTAAAGGATTTGGTTCTAATTTCATTTGTCGCATATGTGGTCGTTACCATAACGCTTCttctaaactaaaattacaTATGGCAATTCACGAGAATTTTGATTGGAAATTGCTTGATAACATtgatattaatgatattaaacAAGAAACTGAAGACACGCAAAGCGATATTAATTACGATAGTTTGATTACTCAAGGCGATATTAATTACGAAAGTTTAATCGAACAAGTGGAATGCAGTTCAGATCAAGATTCGAGCAGTTCATCAGATACGGATAACGATGAAACCGAAGCATCTGAAAATCCACAGGAAGAAACCAAACCGGATATTTCTAGTGAAGATGAATCTAGCACGTCACATAGTGTgcaaattaaaagtgaaaacgGTACTTccgatgatgatgatgaagacGACGATGATGATAATTCCTTATCAGAAAATACTAGCGATACGACCAATCGTAATATGAATATCTATGCGCAGCATCCTGATGTTGTTGATTCAGCTGTAAAATCGATTTGTTACGATGATGATGATGAGGATCCAGATTATGATCAAGAGGATTATACGGAAGTTCAGagtcataataatttaaatccgCATGAAATACAGAGTGCGGTCGATAGCATTCTTTAA
- Protein Sequence
- MINYPGSVFLSKEDLKKVYTACHAENQVSQHCLLPDTICSKCHENVNSFYGFVKNCLQSIIILEAQYDVTESCLRTRRKHDKSCSTDFPPREQSTSIQPTNTYLPQDDIYSPTYTKTKLQNFARTLADAERNLSSPQQLPQSCKIVNYDSSSDDEVVQLPTNINNKLYFDDKENDLINEIAERKSLKRKSDDVIHHSQPKICKFDTNRRKRRPPVKVEKVVNNDSAWNFNTLEQIYDEIQVKQLKEEVIEEVDEGVQCMEQEEAIPSLPQICLLCDTQFAGPSQLATHVFETHGIDMAQVVSNEPILEKKKKIPNLVKIADLKHKRDSQESKLQENGEEPPTLEPSYVCPLCPASLTIKNDLFQHLRQKHQGKAHLLCGLCLFMATSYLNLTDHLAACVQRHPISNPYICKVCKYSDDNQKNTENHVLVHDFIINFCKKEGKIFDPADYIELNLACDSPKLYTCTECGSSFVSFKDFSTHRRSLHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLAQHFNKIHTVKSGKLKNGDVEEEDFMNKKFEAFDFQSVRQSFMRQELAKKEEESVDVPKEIDTSSNLYTNIITNYTPPQNNGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYVCEICDEKVQSKCEIVSHIRFSHPSCQLFCQDCGNVLRNQNELRIHSQDHANSFVCQFCADLLPSKIKLKMHILSLHRKILSLSCGVCLKLFETQHILRDHVRLVHRDVLLPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKACKACLEVFDTDGDLEVHYDAAHGNVPKEKAGKKEILPKKEVEVYESEPEQDEKNSSSAEEESACEEEQPPSKISLLEKRLTLPATIPDLVTPSKQSTPKKKAKKSTKQEDYTPDQNGANSSKRTVYVNSNDPSLCEICLKTWPAKKHLWQHYIRCHKLVAATVCGICLKTNDSYEMLQKHLKEVHPTLLHGKGFGSNFICRICGRYHNASSKLKLHMAIHENFDWKLLDNIDINDIKQETEDTQSDINYDSLITQGDINYESLIEQVECSSDQDSSSSSDTDNDETEASENPQEETKPDISSEDESSTSHSVQIKSENGTSDDDDEDDDDDNSLSENTSDTTNRNMNIYAQHPDVVDSAVKSICYDDDDEDPDYDQEDYTEVQSHNNLNPHEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -