Truf010601.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932245.1
- Location
- OZ010742.1:1109839-1121513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.088 23 8.0 1.9 1 23 50 73 50 73 0.93 2 16 0.23 59 6.7 5.6 3 23 93 113 91 113 0.96 3 16 2.3 6.1e+02 3.5 0.0 1 23 117 139 117 139 0.76 4 16 0.95 2.5e+02 4.7 1.6 1 19 145 163 145 165 0.95 5 16 1.8e-05 0.0046 19.6 0.5 1 23 172 194 172 194 0.98 6 16 0.00058 0.15 14.9 4.0 1 23 200 223 200 223 0.96 7 16 1.1e-05 0.0029 20.3 1.9 1 23 233 256 233 256 0.94 8 16 0.0055 1.5 11.8 0.7 3 23 263 283 261 283 0.97 9 16 0.0002 0.053 16.3 2.7 1 23 294 317 294 317 0.96 10 16 0.0027 0.7 12.8 2.6 1 23 323 345 323 345 0.97 11 16 0.99 2.6e+02 4.7 0.7 1 14 351 364 351 367 0.92 12 16 0.077 20 8.2 0.5 1 23 403 426 403 426 0.95 13 16 0.007 1.8 11.5 1.0 1 23 464 487 464 487 0.91 14 16 0.028 7.3 9.6 1.7 1 23 494 517 494 517 0.94 15 16 0.0023 0.62 13.0 3.4 3 23 523 543 521 543 0.97 16 16 0.095 25 7.9 1.5 1 20 573 592 573 594 0.85
Sequence Information
- Coding Sequence
- ATGTTGAAATCGCCCGTTACAAAATATCTTTTCCCTGGCGATGAAGTTAAATTAGAACCAGAAGACTACGAAAAACATTCCCAAAAAGACGATTCATCATCAGAATCAgatgaagaagaaaatgaaaaaagtatTGAAGGTGATGATTACACCTGCTACATATGTAATGAAGACACCATGCATAGAACCGATCTAAAAACACATTTCATCAACGAACATCCAAGTTGgcaaataagatataaaaagaaacatgAAATTCCAGATCAATCTCATCTATGCCAAATATGCAACGAtgagtttaaaactttaaaaaaattatttgaacatCACAAAACTCACTCGGCAGAATATAATTGTGAAGTTTGTAATGAAGATTTTATTCTGATGATTGATAAAGTGTTGCATATGATTGGTCATGATGAAGAaggtctttataaatgtttagtttGTGATTATAAAACTGCTGATaggtttaaaataactaaacataatcatttggttaatttatatgtttacaaATGTGAAATTTGTGAGAAGCGTTTTAAATCTAAGAAAGTTTTAGAGGAACATGTTTTGGTACATAGAGGTGAAAAACCATTCCAATGTAATCAATGCGATAAAAGATTTTCACATACACAATATATGCTAAAACATGTGATTATGAAACATGTAAATCAACCCGGTGAACCCAATAAGTACAAATGCCACACTTGTCCTAAAACGTTTAGATTAAGTAATCAGCTAAAAACTCATATTGAAGCAATACATGAATTAAAAAGtgttatatgtaatatttgCGGAGTAAAGGTATCCCATAAAAGGTATTTAAAACCACATTTACAAACTCATAAGAATGGATACTTTCCTAAAGAAAAAGCtttcagttgtttgatttgcaataaaggttttgataaaaaatcatatttgttaTCACATCATAGACAGGTGCATTTAGCTGATGATAGATATGCATGCAGATATTGCGATAAACGTTTTGCTTATTCTCGAACTAAGACTGATCATGAAAGGAAGCATTTTTCAGATATGCCGTTTGAATGCAAATTTTGTATGAAGAAATTTTCTTCGAGTAGTGGgaTCATTTTATCCGATGATGAAATCAAATTGGAAGAAGGTGACTACAAAATTACGTATGAATCAAATGATATAACAACAGAAATAAATGAAGATGAACCCATAATTGATGATTACACATGCTACATATGCAATGAGGATACAATGAATGAAACAGATTTAGAAACTCATTTCAACAACCAACATCCTGatgatacaattaaatatacaagaaaatttgaaattacaGAACAATATGCAGTTTGTGAAATATGCCAAGCAAaacatCATTTAGGAATCCATAATGGtaaaacatcatttaaatgTAATGAATGTGGAAAAGGTTTCTTgttaaaacaacaaatgcaaCGGCATGCGTTTAGAGTACACGAACAGAAACGCAATCAATTTAAATGTACTAAATGTACCAGAACATATGAATTTGATCTATCTTTGAGAATGCATATGGaagcaaaacatttaaacagtgttaattgtaaaatttgcgGAAAAATGCTTTCTCATGAAATGCATATGAAGCAACATTTATTAAGACATAAGAATGAAGGTTTGGTGGAAAAACCATGTCAGTTTTGCGATAATCGTTTCGGAAGTTGTACTAATAAAGCTGAGCATGAAAAAAAGTATGAATGTAAATATTGTAGgagaaaatattcttcaaaagcTGGGAAGTATATACATGAGAAAAAATGCGATGCTAATGATGAAAGTTTGGTTTTAATGAAGTAG
- Protein Sequence
- MLKSPVTKYLFPGDEVKLEPEDYEKHSQKDDSSSESDEEENEKSIEGDDYTCYICNEDTMHRTDLKTHFINEHPSWQIRYKKKHEIPDQSHLCQICNDEFKTLKKLFEHHKTHSAEYNCEVCNEDFILMIDKVLHMIGHDEEGLYKCLVCDYKTADRFKITKHNHLVNLYVYKCEICEKRFKSKKVLEEHVLVHRGEKPFQCNQCDKRFSHTQYMLKHVIMKHVNQPGEPNKYKCHTCPKTFRLSNQLKTHIEAIHELKSVICNICGVKVSHKRYLKPHLQTHKNGYFPKEKAFSCLICNKGFDKKSYLLSHHRQVHLADDRYACRYCDKRFAYSRTKTDHERKHFSDMPFECKFCMKKFSSSSGIILSDDEIKLEEGDYKITYESNDITTEINEDEPIIDDYTCYICNEDTMNETDLETHFNNQHPDDTIKYTRKFEITEQYAVCEICQAKHHLGIHNGKTSFKCNECGKGFLLKQQMQRHAFRVHEQKRNQFKCTKCTRTYEFDLSLRMHMEAKHLNSVNCKICGKMLSHEMHMKQHLLRHKNEGLVEKPCQFCDNRFGSCTNKAEHEKKYECKYCRRKYSSKAGKYIHEKKCDANDESLVLMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -