Truf006948.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- Prdm4
- Assembly
- GCA_963932245.1
- Location
- OZ010741.1:93821627-93843379[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0071 1.9 11.4 1.2 2 23 238 260 237 260 0.93 2 12 0.00034 0.09 15.6 0.1 1 23 360 382 360 382 0.96 3 12 0.0041 1.1 12.2 2.0 1 19 386 404 386 405 0.98 4 12 9.9e-06 0.0026 20.4 1.2 2 23 413 435 412 435 0.95 5 12 0.0013 0.35 13.7 2.0 1 20 439 459 439 461 0.94 6 12 0.002 0.53 13.2 5.2 2 23 468 489 467 489 0.97 7 12 0.0023 0.6 13.0 4.0 1 23 502 524 502 524 0.97 8 12 0.14 36 7.4 0.2 1 23 529 551 529 551 0.97 9 12 0.0001 0.027 17.2 3.1 1 23 557 579 557 579 0.98 10 12 2.6e-05 0.007 19.1 2.1 1 23 585 608 585 608 0.97 11 12 0.024 6.4 9.8 0.2 5 23 614 632 612 632 0.92 12 12 0.034 8.8 9.3 2.9 1 23 637 660 637 660 0.97
Sequence Information
- Coding Sequence
- atggatttaataaatattgaaacagTTCCTCGATTACTTCCCTGTGGAATATGTGGGGAACCCCATGAATGTTCTCAATGTGAACTTATAGAATTAAAATGCAGCATTCTAGACACTCCAGTACCATCAAGGGCAATGCTATCATTGCCGAATAAGTTAAAGATTGTTAAAATGTCGGAGGGAACTTTTTCTATTCTATCAAGTGAAGTTATTAATGTTGGAACACGTTTTGGTCCATTTGaagctaaaaaaatgttgactttaTTACCAGAGATTGTTTTTCCATTGAAAGTTTTTCAATCTGATGATTATTTTCAAGAATATTACTTGGATAATTCTAACGAATATGAATGTAATTGGATGTATTTTATTCAGCCTGCTAGCATTTTAGAAGAACAGAATCTGATTTGTTATGaagataaatcaaatatttattatataagtattAAGAAGATTTTTCCAGGGGAACATTTAAAAGTTTGGTATTCTCCATATTATGGGAAGAAGATGAATATAAATACTTTAAGCGACAATGTAGAGGATGAAGTAGTGTTGGAAGAGGAAGACATAAatatgAACGATCTAGTCAAAAAACAGCAGGGTATAGTTGATAGGAAAGTGTggatttgcaaattttgtgaaaaacatgaaacggtggttataaattttgcaattcacATATTAGAACATTACAACATGATGTTAAGGAAGATGTGTGAAATTTGTAAAGATACTTTCCAAACCAGAAAATCTTTAAGAAAACACATATCTTTAGTACATTGTGATGACAAATACGCAAATCAAATAGAactggaaattaataaaaccaatcaaGCTAGTAACGTGTTggataataacaaaaaagatactGTAGTTGGCGATCCTTTATTGAATGGAGCAATGGGAGAAACTTCATTAgaaaatacaaatgttttattagatCATATGATGTTAACAAGTTTTGATATGGATCAAACTAATAACATGTTAGATAATGATAATTTAAGTCTAGGTGTTGAAacattattaatagaaaatgaaaatttcaacttCAACATTGAGGAGAGCAATGAgaaatttatttgtgatatttgtgtaaaaagttttagtaaattaaagcTGTTAGTTCAACATATAGAAGCTCATACTGCAAAATATACATGCGATAAATGCTTAAcgATATTTTCACGCAATGAAAACTTGCAATCACATTGCTGTAACTTTTCATCTGTAGTGGAATGCAAATactgtgataaaaaatttactcttaaaaaatatttaacaagacATATAGCTATTAAGCACCAGACTGAGTATGTATGTACGGATAAgtgtaaaaaagtatttacttcTAGTAAAACATTAGAAGAACACAAATGTGAACCTGAAAATGTTATACTTACATGTAACCaatgccaaaaacaattttattgccaGAGAAATTTAAAACGCCATATGAATGTACATTATGCACaagctttaaaaaagaaacatgtTGTTATGCACATGTGTGAAATATGTGCAAAACATTACCCAACAAAGAAATCgctaaattatcatttaaaaatgcacAAGGATTCTGAATTCGAATGTTCTTTATGCCTGGCTAAATTTGCAAGAAaggatatttatttaaatcatatggaaatacacaaaaaagagtcTCCTCATACATGTACAGAGTGCAATCAAAaattcacattaaaaaaatatttaaatgtacaCATGTTAGTACATAATATGGAATTGAAATATTCATGTTCTGAATGCCCACAAAAATTCAGGCAGAAACCAAATTTGCAAACTCATTTTAAACGAATGCATCAAAAGTTATGTATCACATgtggaaaaatatttaactctgctgtaaaattgaaaaaccatAGTATTattcatttacaaaaatacttcGAATGCCCAATATGTAAacatatagtaaaattaaaaaattcactgCTGAGACATTTTAAGAAGAAGCATGCCGATGAAAATATCCAATGGAGTTCTCAATTTGAAGTTGACGGTAGTGATCAAATAGTTGCTGTTGAAAATGTGGATAATGTTGAaagtattgaaaataataatatatgcaaTGAAATTGATTCAAATGATAAAGATGAAAGTAACTGTGATGATATTGTGAAATTGTTAGAAGAGAAAAATGATGCAGATATGCAAGATATTGATACTAATTTGGATTATATTGTGAATACTTATGATACAAACAATTTGAtagaaagcaattttaataataaaaatgataattgtaAAATGGATGATAACATGttagattttaatagtttggaaATGGAATTTgagaaaaactttaatattccACCTGCAAATTCGAATGCCGTTTGTTTATCTATGCCTGAATTGGATGTCATAGATCAGAATATAACTTTTGgaGAAAATGCTTATATTTTGGATAATGGAAATATTATTGAGCCTATTGAAGAAGGAAAAGTTGTGGTATATATTAtggataaagaagaagaagaagataaagaagcctga
- Protein Sequence
- MDLINIETVPRLLPCGICGEPHECSQCELIELKCSILDTPVPSRAMLSLPNKLKIVKMSEGTFSILSSEVINVGTRFGPFEAKKMLTLLPEIVFPLKVFQSDDYFQEYYLDNSNEYECNWMYFIQPASILEEQNLICYEDKSNIYYISIKKIFPGEHLKVWYSPYYGKKMNINTLSDNVEDEVVLEEEDINMNDLVKKQQGIVDRKVWICKFCEKHETVVINFAIHILEHYNMMLRKMCEICKDTFQTRKSLRKHISLVHCDDKYANQIELEINKTNQASNVLDNNKKDTVVGDPLLNGAMGETSLENTNVLLDHMMLTSFDMDQTNNMLDNDNLSLGVETLLIENENFNFNIEESNEKFICDICVKSFSKLKLLVQHIEAHTAKYTCDKCLTIFSRNENLQSHCCNFSSVVECKYCDKKFTLKKYLTRHIAIKHQTEYVCTDKCKKVFTSSKTLEEHKCEPENVILTCNQCQKQFYCQRNLKRHMNVHYAQALKKKHVVMHMCEICAKHYPTKKSLNYHLKMHKDSEFECSLCLAKFARKDIYLNHMEIHKKESPHTCTECNQKFTLKKYLNVHMLVHNMELKYSCSECPQKFRQKPNLQTHFKRMHQKLCITCGKIFNSAVKLKNHSIIHLQKYFECPICKHIVKLKNSLLRHFKKKHADENIQWSSQFEVDGSDQIVAVENVDNVESIENNNICNEIDSNDKDESNCDDIVKLLEEKNDADMQDIDTNLDYIVNTYDTNNLIESNFNNKNDNCKMDDNMLDFNSLEMEFEKNFNIPPANSNAVCLSMPELDVIDQNITFGENAYILDNGNIIEPIEEGKVVVYIMDKEEEEDKEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -