Truf010571.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932245.1
- Location
- OZ010742.1:559414-579752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0035 0.93 12.4 0.5 1 23 44 66 44 66 0.95 2 12 0.063 17 8.5 0.4 1 23 72 95 72 95 0.95 3 12 0.001 0.28 14.1 3.1 1 23 99 121 99 121 0.97 4 12 3.4e-05 0.0089 18.7 1.4 1 23 127 150 127 150 0.95 5 12 0.00023 0.06 16.2 1.7 1 23 159 182 159 182 0.95 6 12 9.9e-06 0.0026 20.4 0.3 3 23 189 209 187 209 0.97 7 12 6e-05 0.016 18.0 3.6 1 23 215 237 215 237 0.99 8 12 1.8e-06 0.00048 22.7 0.7 1 23 243 265 243 265 0.97 9 12 0.97 2.6e+02 4.7 0.3 13 23 299 309 298 309 0.89 10 12 1.6e-06 0.00042 22.9 2.3 1 23 315 337 315 337 0.98 11 12 1.5e-05 0.0041 19.8 0.8 1 23 343 365 343 365 0.98 12 12 1.6e-05 0.0043 19.7 0.6 1 21 371 391 371 392 0.95
Sequence Information
- Coding Sequence
- ATGTTGAGGGAATCAACCAAAAAACCAACCGGAAAAAGAAAAACCCgcataaaaccaaaatcattttgcaatatttgctgCAAATATGTGGAAAAACATGGAACACATTTTATTAGACATGAACAATACTTTAATTGCCCATCATGCtacaaatcatttaaaaaagaagTTGATTATATAGAACATACAATAGAACATAGTGAAGACAATAAATTTTCTTGCGTACATTGCGATTATACTACGGGAAATATTGAAGATGTTAGCAAACACCTTGCTAAAGGACACGAACCAAGATATGAGTGTacattatgcaataaaaaatttacagttttttcttgGTTTAAGGATCATTTCAATTATCATACTAATTTGGAACCTTATGAATGCAAACATTGCGATAAGAAATTTCCATATTCAAGATTTTTAGCAGCGcatattgttattaaacattGTAATACTCTTccaattaaatcatttatttgttttcaatgtgGTAAATCGTATCAATCTAAAAAGTATCTTATCCAACACAGAGAAGTAAAACATAAAGGTAATACAATGATTTGTGATATTTGTGGAAAGAATATAAccgataaaaataaattagaattgcATATGCGTACACATACTGGTTACAAACCATATAAATGCGAATATTGCGAAAAAAGTTTCAGTGTAAAATGCAGGTTGCGTGAACATGAAAGGGTTCATACTGGTGAAAAACCGCATGTATGTTTGGAATGTGGAAAAGGATTTACACAGAGGACTAGTTTGGTTGTACATATAAGAAATCATACTGGTGAAAAACCATTTCAATGTCAtgtttATAGACATAAAGAATTAGTGCATAAAGGTAAAGTAATGATTTGCGGTAAGCAATTGCAGTTATTGGATAGAGATAAATTGGAATTGCATATGCGGACACATACTGGGTATAAACCACACAAATGCGATTATTGCGAGAAGACTTTTAGTGTTAGTAGTTCGTTGCGTGAACATGAAAGAATTCATACTGGTGAGAAACCATACATTTGTGAGAAATGTGGGAGTAAATTTACACAGAGAACTAGTTTGGTAATTCATATGAGTAGGCATACTAATGATAAACTATTTGAATGTGATATTTGTaagaagaaatttgtttttaaatccaTGTTGAATTCGCATTTGAAAGTCTGCAAAGGACGTTAG
- Protein Sequence
- MLRESTKKPTGKRKTRIKPKSFCNICCKYVEKHGTHFIRHEQYFNCPSCYKSFKKEVDYIEHTIEHSEDNKFSCVHCDYTTGNIEDVSKHLAKGHEPRYECTLCNKKFTVFSWFKDHFNYHTNLEPYECKHCDKKFPYSRFLAAHIVIKHCNTLPIKSFICFQCGKSYQSKKYLIQHREVKHKGNTMICDICGKNITDKNKLELHMRTHTGYKPYKCEYCEKSFSVKCRLREHERVHTGEKPHVCLECGKGFTQRTSLVVHIRNHTGEKPFQCHVYRHKELVHKGKVMICGKQLQLLDRDKLELHMRTHTGYKPHKCDYCEKTFSVSSSLREHERIHTGEKPYICEKCGSKFTQRTSLVIHMSRHTNDKLFECDICKKKFVFKSMLNSHLKVCKGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -