Truf010574.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932245.1
- Location
- OZ010742.1:606369-627854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.3 1.4e+03 2.4 5.5 4 23 180 199 180 199 0.95 2 18 0.16 43 7.2 3.7 1 23 203 225 203 225 0.94 3 18 0.91 2.4e+02 4.8 0.6 1 20 231 250 231 255 0.91 4 18 0.00014 0.037 16.8 0.1 1 23 259 281 259 281 0.98 5 18 0.00018 0.047 16.5 2.3 1 23 287 310 287 310 0.96 6 18 0.0014 0.37 13.6 0.5 1 23 321 344 321 344 0.97 7 18 0.00022 0.058 16.2 0.4 3 23 351 371 350 371 0.98 8 18 0.093 24 7.9 1.4 1 23 377 399 377 399 0.89 9 18 0.14 38 7.3 6.2 1 23 405 427 405 427 0.84 10 18 0.0035 0.93 12.4 1.5 1 23 433 455 433 455 0.97 11 18 0.14 37 7.4 1.9 1 23 495 517 495 517 0.92 12 18 4.7e-06 0.0012 21.4 2.9 1 23 523 546 523 546 0.97 13 18 0.0001 0.028 17.2 0.8 1 23 557 580 557 580 0.97 14 18 0.00032 0.084 15.7 0.9 2 23 586 607 586 607 0.97 15 18 1.4e-05 0.0036 20.0 1.5 1 23 613 635 613 635 0.97 16 18 0.016 4.3 10.3 1.0 1 20 641 660 641 663 0.94 17 18 8.3e-06 0.0022 20.7 1.1 1 23 669 691 669 691 0.98 18 18 0.021 5.4 10.0 0.4 1 23 697 720 697 720 0.92
Sequence Information
- Coding Sequence
- ATGCAGTCAGCCATGCTAATGATGGAATATTTGCTTGCATACATTGCAACTATACAACGGAAAAGgtttttaaattatgaatttattatcaaagaTGAAGACGATATTAAGGAAAAGGATATTGAAGAAGATTACGTTAAAGAAGGTGATGTTAAAGAAGACGATGGTAATGAAGACGATGTTGAAAAAGGTGATGTTGAAGAAGACGATTTAAAAGAAGAGGATGACAAAGAAGATAGTGTTAAAGAAGGTGATGTTATAGAAAACGATGGTACTGAAAACGATGTTGAAGAAGAAGATACTGAAGAAGACGATGTTAAAGAAGACGATGGTAATGAAAACGATGTTGAAGTAGGTGATATTGAAGATCCTTTTCTTCAAGTTAAAGAAGAACATGATAAAGAAAACGATAGTAAACAAGATAATGTCATAAAAGATGATGTTAAAGAAaacgacaacaaaataaacgaCGTTAAAGAAGAATCCAATTGGGAGGATCTAAACCATTCAAAAAAAggcaaatcaataaataaaaaacattactgCAAAATTTGCTGCAGAAAAGTTAGTAATTTCAAACTACACACTAAAGCGCACGACATATACTACAATTGCAACTCGTgctataaatcttttaaaaaagaattacatTTTATGGAGCATGCTGTTAAACATGCGgatgataaaaaatttgcttgCTTGCATTGCAACTTTAAAGCGGAAAAAGCAATTGAtttaagaaaacatatttttgaaacaattcaTGAGCCGAGATAtgaatgtaaaatttgtaatgaAACATTCACAGTATTATCTTGGTACGAAGAACATGCGAATATTCATGCAAAATTGAATCCGTTTAAATGCAAACATTGCGATAAAAAATATCCATACTCAAGATATTTAGCAGAACATATTGTAAAAGTGCATGAAGATACTTTACCTATATCTAATATGTTGTATCCTTGTGCTCtttgtgataaaatttataaaattaaaaatagtttgtattaTCACATGAAGGTAACACATAATGATATTAAACCTGCGTGTAACATTTGTGGAAAGAAATTTTCTCAAGATTATATATTACAATATCATATACGTTCTCACACTGGTGAAAAgccatttaaatgtaaatattgcaaaatgggATTTGCTAAAAAAACCAGGCTTATTCCACATGAAAGTAGTCATACTGGTATTAAACCATTCAAATGTAAGCATTGCGATAAgtcatttaatgttaaaatgagATGTAAGGAACATGAAATAACTCATACTGGTAGTAAACCTTATGCTTGTGATGAATGCGATGCCACTTTTATGCTTAAGCATTATTTGAATGTACATAAGAAGCAACATGCTGAGCATGCAGTCAGTCATGCAGATGATGGTAAATTTGCTTGCATACATTGCGACTACACAACAGAAAAAGCTGCAGATATAGCAATTCATCTTAGTGGAGGCCATGAACCAAGATATGAATGCAAAATATGCCATATGCAATTTACTATAATGTCTTGGTATGCAgatcattttaattttcatgCTGATTTGGAACCTTATGAATGCAAACATTGTGATAAAAAGTTTCCTTACTCAAGACATTTAGCAGCGCATATTTTGAAAGTTCATGAAGATACTTTGCCTTTATTCCATATGGTTTTTCCATGTGGTCTTTGcgataaattttatcaaagtaaaaaatctgttaataaaCATATGAGGATTGTGCATGGTGGTAATCAACCGGTTTGTGAAATTTGTGGGAAGAAATTTTCGGAGAAATGCATATTGGAATTGCATATGCGTATACATACTGGTTATAGACCATACCAATGTAGCTATTGTGAGAAAACATTTACTAGAAAAAACAGGCTTCAAGAACATGAAATTATCCATGGTGGTATTTTAccgtttaaatgtaatttttgcgaAAAAGCATATCCGTCTAAAGTGAGATTGAAAGAACATAAATGGGTTCATACTGGGGAGAAACCTTTCACTTGTGATGAATGTGGTTCTGGTTTTACGCAAAGGAGTAGTTTGAAAATTCATAAGAGGAATCATACAGGTGAAAAACCTTTTCAGTGCAATCTATGTGATGAGTCGTTTTCAGCAGGACCTATCCTGAATAAACATctcaaaaaatatcattaa
- Protein Sequence
- MQSAMLMMEYLLAYIATIQRKRFLNYEFIIKDEDDIKEKDIEEDYVKEGDVKEDDGNEDDVEKGDVEEDDLKEEDDKEDSVKEGDVIENDGTENDVEEEDTEEDDVKEDDGNENDVEVGDIEDPFLQVKEEHDKENDSKQDNVIKDDVKENDNKINDVKEESNWEDLNHSKKGKSINKKHYCKICCRKVSNFKLHTKAHDIYYNCNSCYKSFKKELHFMEHAVKHADDKKFACLHCNFKAEKAIDLRKHIFETIHEPRYECKICNETFTVLSWYEEHANIHAKLNPFKCKHCDKKYPYSRYLAEHIVKVHEDTLPISNMLYPCALCDKIYKIKNSLYYHMKVTHNDIKPACNICGKKFSQDYILQYHIRSHTGEKPFKCKYCKMGFAKKTRLIPHESSHTGIKPFKCKHCDKSFNVKMRCKEHEITHTGSKPYACDECDATFMLKHYLNVHKKQHAEHAVSHADDGKFACIHCDYTTEKAADIAIHLSGGHEPRYECKICHMQFTIMSWYADHFNFHADLEPYECKHCDKKFPYSRHLAAHILKVHEDTLPLFHMVFPCGLCDKFYQSKKSVNKHMRIVHGGNQPVCEICGKKFSEKCILELHMRIHTGYRPYQCSYCEKTFTRKNRLQEHEIIHGGILPFKCNFCEKAYPSKVRLKEHKWVHTGEKPFTCDECGSGFTQRSSLKIHKRNHTGEKPFQCNLCDESFSAGPILNKHLKKYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -