Truf016651.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- Snai1
- Assembly
- GCA_963932245.1
- Location
- OZ010742.1:108016085-108022998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 4.7e+02 3.9 0.1 3 16 63 76 61 78 0.76 2 13 0.00034 0.09 15.6 0.1 1 23 317 339 317 339 0.95 3 13 9.7e-05 0.026 17.3 1.6 1 23 347 369 347 369 0.99 4 13 9.4e-05 0.025 17.3 0.2 3 23 378 398 376 398 0.97 5 13 4.3e-06 0.0011 21.6 0.8 1 23 404 426 404 426 0.98 6 13 0.00016 0.042 16.6 3.4 1 23 433 455 433 455 0.99 7 13 0.00017 0.044 16.6 1.0 1 23 461 483 461 483 0.95 8 13 3.2e-05 0.0084 18.8 0.1 1 23 489 511 489 511 0.98 9 13 1.1e-06 0.00028 23.5 1.2 1 23 517 540 517 540 0.96 10 13 8.1e-06 0.0021 20.7 0.4 1 23 546 569 546 569 0.96 11 13 2.4e-05 0.0065 19.2 2.5 1 23 575 597 575 597 0.99 12 13 0.00016 0.043 16.6 0.4 1 23 603 625 603 625 0.94 13 13 0.0022 0.58 13.1 0.1 1 23 631 655 631 655 0.92
Sequence Information
- Coding Sequence
- aTGAGTGTTACTCAGGAGCAGAAGGACAAttcattttgtttgatatgCAGTGGAAGAGTTGTACAAAATTCTCTGGAAATCTTCAACAAGGAAacGCAAACATGTTCAGAACGCCcattaagttttataatgtcGCAAGTATTGGCACAAGacataaatgaagaaaataccCACTCGCACAtgatatgtaaaaaatgttttaaagtatttgatgAAGTAGACGAGTTAGAACATAGactattagaattaaaaatggaattaatTAACAGCTACAAACGTTCAGTGCACAGAAATAAAACAGGTGAAATCGATGATGATGAGGATGAAGAATTAATTCAAGAAGAATGCGACGATggtgaaattaaagaaacaaataagGAAAATTTAGTGCCAAAGAAAATTTTGGACATTCCATCATCGGATGATGAAAGTGGACagtCTCATCAAAAGAAACcaagtttacaaacattagAAGATATTGAAATGGAGTTGGTTAAAATCCATGGTGATAGTGGTGTTGAGAAAAATGAACCTGATCAAGTTGATGATGAAGATGGAGAAAATTCAAATCAACAagtgtatagttttaaaaatgattctgTTACATCCGCTGATTCAGAAATGGAGTCTCAAGATAATACAGAAATAATACTACATGCAGCAGCTCTAGCTGAACGGACTTTAGGAGGTAAAGTTAAGATTGAAAATACAGACGATGAGAAACCAAACAGCTTGAAACGAAAAGCAATTAATATATTAGCCAATAATGCTAAGAAAGAACCaccattgaaaaaaattaaagaagaatatCAACCTGTTATAACAACaaatatggTGACGAGGGATGGTGATTTATACACGTGTTTATTATGTGACGGTGATGAAACTGTTTGTGGTGAAGCTAAAGCAATTACTCAGCATATCAAAATGGTTCATGATGCACGTATCTACATATGCGATGTATGCGgtgaagattttaaaaaacgaACTGATTTGTCGGTACATTTAGATGAACATGTTGCAACTGAGGAAGGTGATTTCCAGTGTGAAGTCtgtaatagaatttttaataatttaagactaTTCCGTATACATAAAAGGATGCATTATCCACAAAATAAAGCTTGGGCTTGTGAAACATGTGGGAAAAAATATAGttcgaGGAATTTGTTAGATGAGCATATAAATACGCATACTGGAGTGAGGCCGTATGTTTGTCAAGTTTGTGGTAAAgattttgcttcaaaatatacatttaaggCACATGAAAAAACTCATGAGGTACGGCCACGACCGTTTCAATGCGAAGTTTGCCATAAGACGTTTTTGAGTCAGCAAAATTTGTCGCAGCATGAACGCACTCATACAGGACTTAAGGAATATGCTTGTCATTTGTGTGataaacaaTTTGGTTCTGCACATAATTTGGAAGTACATTCTATAGTTCATACTGGATATAAGCCATTTATTTGCGGTTTATGTGGTAAAGCATTTGCAAGAAAAGCCGAGATTCGTGATCATGAACGTACTCATACTGGTGAAAGACCATATCAATGCGAATTTTGTGGAGCCACCTTTAGCCAGCGATCTAATTTACAGTCGCATAAACGTGCTACTCATTACGATGACAAAAGATATAAATGTGAAGAATGTGGAAAAGGATTTAAAAGAAGAAGatTATTAGATTACCATATAAAAGCTGCTCACACTGGTGAAAGACCATTCAAATGTAATGTTTGTGAAGCCACGTTTGTTTAtccagaacattttaaaaagcatCGTCGCATTCACACTGGtgaaaaaccatttttatgtGAAGTTTGTGGAAAGGCTTTCAATAGCAGAGATAACAGAAATGCTCATCGCTTTGTTCATTCTGATAAAAAACCATATGAATGTTTGGTATGTGGAGCTGGTTTCATGAGAAAACCTTTATTATATCAACACATGCAATCACAAGGACATTTAAATGACACTATTGTcgtaaatcaaccaagattgaCAACAGATGATGATCAAATAATCACTGTGAATGCTGATGGTGAAATGGAATTAGTGGAAGGTGATGTTGGTAGATTGGAGCCAATTGATGAGGAAGGTCGTGAAGatactaaattatatattgcgGAACATATGTTAGTTGATGGTACGAAAGTTTTGGAACATTCGGAAGGTACTTTAATCTTGGGCGATAATGGAGATGATTCTGAAGCTGTTGAACATATTATCATTGATGGAcagCAAATTCAGTTTGCTGAGGCTGATGAAGAAGGTGAAATGGAAGATGGGGAAGATGATGATGATCATATATTAGCAACAGCTGAAGAATATGAAGGTATTATTTCACCTGAAGCTTTAGCAGGTGGTCAAACCCAAATAATTCAAACGAAAGAAGGTCCTGTGCAACTTGTAGCTGTACGAATACCAAATGAGAAAGGAGAGGAGGAAGAAGCATGGATTAAAATAGTCCCTGAAACTTCTGTTGAATAA
- Protein Sequence
- MSVTQEQKDNSFCLICSGRVVQNSLEIFNKETQTCSERPLSFIMSQVLAQDINEENTHSHMICKKCFKVFDEVDELEHRLLELKMELINSYKRSVHRNKTGEIDDDEDEELIQEECDDGEIKETNKENLVPKKILDIPSSDDESGQSHQKKPSLQTLEDIEMELVKIHGDSGVEKNEPDQVDDEDGENSNQQVYSFKNDSVTSADSEMESQDNTEIILHAAALAERTLGGKVKIENTDDEKPNSLKRKAINILANNAKKEPPLKKIKEEYQPVITTNMVTRDGDLYTCLLCDGDETVCGEAKAITQHIKMVHDARIYICDVCGEDFKKRTDLSVHLDEHVATEEGDFQCEVCNRIFNNLRLFRIHKRMHYPQNKAWACETCGKKYSSRNLLDEHINTHTGVRPYVCQVCGKDFASKYTFKAHEKTHEVRPRPFQCEVCHKTFLSQQNLSQHERTHTGLKEYACHLCDKQFGSAHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCEECGKGFKRRRLLDYHIKAAHTGERPFKCNVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQIITVNADGEMELVEGDVGRLEPIDEEGREDTKLYIAEHMLVDGTKVLEHSEGTLILGDNGDDSEAVEHIIIDGQQIQFAEADEEGEMEDGEDDDDHILATAEEYEGIISPEALAGGQTQIIQTKEGPVQLVAVRIPNEKGEEEEAWIKIVPETSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -