Truf035729.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachinus rufipes
Gene Symbol
-
Assembly
GCA_963932245.1
Location
OZ010745.1:3101946-3110362[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.8e-07 4.7e-05 25.9 1.5 1 23 216 238 216 238 0.98
2 12 3.6e-06 0.00094 21.8 7.4 1 23 244 266 244 266 0.98
3 12 3.2e-05 0.0084 18.8 0.4 1 23 272 294 272 294 0.99
4 12 0.00024 0.064 16.1 1.6 1 23 300 322 300 322 0.96
5 12 0.00028 0.075 15.8 1.4 1 23 328 350 328 350 0.97
6 12 1.5e-07 3.8e-05 26.2 2.7 3 23 358 378 356 378 0.97
7 12 2.5e-07 6.6e-05 25.4 0.7 1 23 383 405 383 405 0.98
8 12 1.5e-06 0.00039 23.0 2.8 1 23 411 433 411 433 0.99
9 12 7.5e-06 0.002 20.8 1.3 1 23 438 460 438 460 0.96
10 12 3.8e-08 1e-05 28.0 2.8 1 23 466 488 466 488 0.99
11 12 2.8e-08 7.4e-06 28.4 1.7 1 23 494 516 494 516 0.99
12 12 1e-06 0.00028 23.5 0.7 1 23 522 544 522 544 0.98

Sequence Information

Coding Sequence
ATGAACAACAGTTTCAATTTATCTGAATGTTGTAGGGCTTGTTTAAGGGTTGAATGTACCCTGACATCAACAACAGCACAAGATACAGACACCATTAAGTTATGTGATAAATTAACCACTTGTGTTTCGGAAGTTcCGTGGAGTAAGGAAGGTTTTACTACGCTCATATGTACGAATTGTATAGATAAATTGAGGATAGCGTACGATTTTCGAATACAATGTTTACAATCGGATAACAATCTACAGCAGTATTTATTGCAGGATAAAGTTACTAATATCAGTATACAATCATATATACCTGTAGCTGACATCACCCTATCAAACAGTATCCAATACGCCGACGTCGAATCGAACAAGATCGAAGCGAACAGCTCAGAATTCCTTAAGCAATTATTAGAAGACGAAGACATTTCAAAATCATCAAACACATTACCGGAAATAAACGCCTCGAGAAGCGAAACACCCGAATCCATAGCCACAACAGGCTTCGTAAAATTCGACAAAATCCCCAAACGCATCGTCAGTACACGTTCGGTAAAAACGCAAACGCAAGCATTACCACAATACCCAACATTAACACCAGCAGCTGCACGATTGGAAGccttacaaaataaaaccacaATTGTTGTAGACGATCCGTACAAACATACCTGTGAAGTGTGTggcaaaaaatatgcaaaaaacgcgaatttaaaaatacacatgAGGACACATACTGGGGAAAAACCGTTTGAATGTAAATATTGCGAGAAGAAATTTTATCATTCGTCTCATTTACGCGAACATATACGTAGGCATACGGGGGAAAAACCGTTTCAATGTAGTGTTTGTTTGAAGCGTTTTACTATTACGGCTGAGTTGACGGTGCATATGCGTATTCATACGGGTGAGAAGCCGTATGCTTGTAATTGTTGCGAAAAGCGTTATATTAAAGCTTCGGATTTACAAGTACATATGCGTTCTCATACTGGTGAAAAACCATTTGCGTGTACttattgtgataaaaaatttacaagcgGATACATTTTAAATTCACATTTAAAAACTCATACAGGTGATCGACCATGGGCGTGCAATCTATGCAATAAATCATTCACTCAATCTTCACATTTAACTGTACATATGAAAAAACATACGGGGGAAAAATTTCCTTGTAAGGTATGCGGTGCTGAGTTTACACATTCATCACAACTTACAGTGCATATGAGGGAGCATACAGGTAAGCAACCTTATAAATGCACAATGTGTGATAAGGTTTGTAACTACGCATCCGAGTTGCAAACGCATATGATGAAACACACGGGGGAAAAATTCACCTGTATtacttgtgataaaaaatttacaacgtCGGCTTATTTGCAAGAACATATACGTACGCATACTGGTGAGAATCTATTTACTTGTACTATGTGTGATCGTTCATTTACTCGACAGACTTATTTGGAGAAACATATTCGTACCCATACAGGTGAGAAACCGTATTCTTGTGAAGTATGCACGAAAACATTTACGCAATCTTCTTCTCTTAATGTTCATATGAGGAAACATACAGGGGAGAAACCATACGCTTGTACTATTTGTAGTAGAAGCTTTGCAACTAGCTCATACCTTTCCGTACATTTAAGGAAACACAAAAAGTACatctgtttataa
Protein Sequence
MNNSFNLSECCRACLRVECTLTSTTAQDTDTIKLCDKLTTCVSEVPWSKEGFTTLICTNCIDKLRIAYDFRIQCLQSDNNLQQYLLQDKVTNISIQSYIPVADITLSNSIQYADVESNKIEANSSEFLKQLLEDEDISKSSNTLPEINASRSETPESIATTGFVKFDKIPKRIVSTRSVKTQTQALPQYPTLTPAAARLEALQNKTTIVVDDPYKHTCEVCGKKYAKNANLKIHMRTHTGEKPFECKYCEKKFYHSSHLREHIRRHTGEKPFQCSVCLKRFTITAELTVHMRIHTGEKPYACNCCEKRYIKASDLQVHMRSHTGEKPFACTYCDKKFTSGYILNSHLKTHTGDRPWACNLCNKSFTQSSHLTVHMKKHTGEKFPCKVCGAEFTHSSQLTVHMREHTGKQPYKCTMCDKVCNYASELQTHMMKHTGEKFTCITCDKKFTTSAYLQEHIRTHTGENLFTCTMCDRSFTRQTYLEKHIRTHTGEKPYSCEVCTKTFTQSSSLNVHMRKHTGEKPYACTICSRSFATSSYLSVHLRKHKKYICL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01096814;
90% Identity
-
80% Identity
-