Truf043606.1
Basic Information
- Insect
- Tachinus rufipes
- Gene Symbol
- -
- Assembly
- GCA_963932245.1
- Location
- OZ010745.1:118764130-118781503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.056 15 8.6 0.3 2 21 110 129 110 130 0.93 2 24 0.023 6.2 9.8 4.0 3 23 142 162 140 162 0.97 3 24 1.8e-06 0.00046 22.8 1.8 1 23 168 190 168 190 0.98 4 24 6.5e-06 0.0017 21.0 2.6 1 23 196 218 196 218 0.98 5 24 4.6e-06 0.0012 21.5 1.0 1 23 224 246 224 246 0.99 6 24 0.15 39 7.3 0.2 3 23 259 278 257 278 0.96 7 24 0.0022 0.57 13.1 0.6 1 23 287 310 287 310 0.98 8 24 0.0015 0.4 13.6 0.7 5 23 321 339 318 339 0.93 9 24 4.7e-06 0.0012 21.4 5.3 1 23 345 367 345 367 0.98 10 24 0.00057 0.15 14.9 1.7 1 23 373 395 373 395 0.95 11 24 0.0065 1.7 11.6 0.0 1 23 401 424 401 424 0.97 12 24 0.00018 0.049 16.4 1.3 1 23 430 453 430 453 0.96 13 24 0.45 1.2e+02 5.8 0.2 2 21 578 597 578 598 0.93 14 24 0.0014 0.37 13.6 4.4 3 23 610 630 608 630 0.97 15 24 4.3e-06 0.0011 21.6 1.7 1 23 636 658 636 658 0.98 16 24 6.2e-06 0.0016 21.1 2.9 1 23 664 686 664 686 0.98 17 24 2.6e-05 0.0068 19.1 4.1 1 23 747 769 747 769 0.97 18 24 0.01 2.7 11.0 1.6 2 23 783 803 782 804 0.94 19 24 0.0058 1.5 11.7 3.0 1 23 810 833 810 833 0.98 20 24 0.0036 0.95 12.4 5.4 1 23 839 861 839 861 0.99 21 24 0.012 3.1 10.7 0.4 1 23 867 889 867 889 0.98 22 24 1.8e-05 0.0047 19.6 1.2 1 23 895 917 895 917 0.96 23 24 1.9e-05 0.005 19.6 3.1 1 23 923 945 923 945 0.99 24 24 0.00097 0.26 14.2 1.0 3 23 953 974 951 974 0.95
Sequence Information
- Coding Sequence
- atgtcaGATCAAGTTGTTGCAATCAAGACTGAAATTAAAATCGAAGAAGAAATGGATGTGGAGGATCCATACGAACAACCGAGAGTTAAAATTAAGGATGAAGTTGTCTCGGATGGAGAAAGCGCCTATGATGAGTCCTTGGTGGGTTCAAACATAGCAATGGATCTTCAAGAACCGGAATTAGTGCAAGTTAAAACAGAACCTGAAACGACGCCGGACGATACAAAGATCAACAACAGTGAAGAGGTTAACGACGGAGAGGATGACAATAGTGATAGCGACGATGGCAATCCATCAAACGAAAATTTCGACGACGACattccaaattattgtaaaGTGTGTCAAACCACCTTCGATTCCGACGAGGAGTACAGATGGCACTACAAGTCAATATCTACGGGCGGAGCCAAGAAACCTTACGGATGCTGCAACTGCAAAAggaattttcgtGATCTAACACAAATCAAGGTTCATCAGAGAAGACACACAGGCGAGAAACCGTTTTCTTGCAACATTTGCAATAAGAAGTTCTCGGTAAATGGAAATCTAACCAAACATAAATTGACGCATACCGGGGAGCGTCCCTTCGAATGCGACACCTGTGAGAAGAAATTCACTCAGTATGCACATCTGGAGGACCACATGAAATCACATTcaggGGAAAGGGCATTTAAATGCGACCGATGCGGTTCGAGCTTCAAACGAATGGGCGCCCTACGTAACCACATACGCACCCATCGCACCGACTGCAAAAACCAGCAAAGGGATTCGATATGTCAAATATGTACCCGCAAAGTCAGCTCCATACAACTAGAAGTACACATGATGCTCCACGGTTACGACAAGACAACCGAAACCTACAAATGCGCCATCTGCAAAGAGGGACTGCCAACGCACGATTTACTCCaagaacatattaaaaaatttcacgCAGATGAGGAGAAAAccaatatttgtataatatgcAGCAAAGTTTTTACCAGACGCACCGATTTATATACTCATACCAAGATAcatgttgatttaaaaacgtATAAATGTGAAGTATGCCATAAAGCATTCCACAATTCATCAAATTTGAGGCGGCATAGAATTAGCCATCAAGGTTTGAAGCCGTTTCCGTGCGAACATTGCGATCGCGGCTTTACGTCGCTGCAAAATCGCAACCGGCATCAGGTGCTTCACGATAAAATCCGAATGTATCCGTGCGACTATTGCgatgaaatttttgaagaatCGGTCGCCATTAGGGAACACGTGCGGAGTGCGCATGCGGGTGATAGGAAATTTCAGTGCGCgttttgtgataaaaagtttagGCTGCGCGAGGCTTTAACGAAGCATACTATTAGACTGCATTCCGAACATTTGGACGATAGTGGAGTGGAGAAGAAGGGTAGAAATGTGGAGTTTATTAATGTTGAGGGTGGGGAGGTTTCTCAGTTTAAGGTCGAAGCTACTGATTATGAAGTGTCGGCTACTAATAAATTATCTGTTCCAGCAGCCGATGCAATCATCCCGATTTCGGACATAAAACTCGATTACCAAGAACCGGAATTGGTTCAAGTCAAAACAGAATCTTCATTAGCCGCCGACGAAATCGAAATGGATATTCAAGAAAACGGCATCAACGGAGAAACCAAGAACGAGGAAGAGAAGAACGACGAAGATAGCGCTGATAGCGAAGACGACCGTTCTTCCGACGAAAATTTCGACGACGACGTTCCGAATTACTGTAAAGTGTGCAAGGGTTCGTTCGATACCGACGAGGAGTACAGGTGGCATTACAAGCTGGTCGCGAGCGGCGGTTGTAAGAAACCTTATGGATGCTGCAACTGCAAAAGGaatttccgTGATCTGACCCAGCTCAAGGTGCACCAGCGAAGACACACCGGCGAGAAACCGTACTCCtgtaatatttgcaataaaaagttttcgaTAAACGGAAATCTGACGAAACACAAATTGACCCATACGGGGGAGCGACCGTTCGAATGCGACACGTGCGAGAAGAAGTTCACACAGTTTGCCCATCTCGAGGATCATATGAAGACACATTCAGTCGAGACCAGAGCGGACACAAAGAAGACGAAAGGGCGTCTACGAACAACAGAAATGATGACCCTCCGAACCATATTGGGTCTCAGCATAAGGGACAGAGTACGCAGCGAGGAAATACGAAGGGACTGCGGAGTTTATGATATCGTACGTTGGACAAGAACAAGACGTGATAAACCGTTTGCCTGCGACCAATGCGACATGTCCTTCAAAACCAAAGCCTGTCTGAAAAAACATACCCGATCGCACGAAGAAACGAAAATAACAGGAAAACGAAGAATGACCACGCAATGCGAAATCTGCAATAAACGCTTCACGTTAGCACAAATTGAAGGCCACATGAATAAACACCACGATATCGTCAGTAGCTACCAATGCACCCAATGCGAGGTTTTCGTAAAAACCTACAGTTGCCTGCAAGGGCACATGAAAACGATGCATGCTGACCTAAAAAATTACACCTGCAACATATGCGATAAGCGCTATTTAACTGGGCACCATCTAAGCAGACATCTTAAAACTCATGCTGGTATTAAGCCATATATTTGTCAATTGTGCATGCGTCCGTTTGCCAGTATGCAGAATATGAAGCGACATTTGCAAGTCCATCGGGGTGAGAAGCCACACGCCTGTGAGATCTGCCAAAAAGCTTTTCttacattagaaaatttaaaacgaCATATCCGTACTCATACTAAAGAAAAACCATATTCATGTACTGTTTGTGATAAACAGTTTTCACACAGTACCACTGTGAAAGAACACATGATGACCCATACTGGGGAGAAACCATATGGTTGtggaatttgcaataaattttttactcttaataaaatgttatataaacatATAAGGGATAAACATTCGGATCATTTGAAGCAGAACGATATCAAGCAAATGTGCAGATATGTACCAAATAATATACCTAATTTTGTtggaattaaaacagaaattaaggAGGAGGAAGAAGAAGTTAGCTAA
- Protein Sequence
- MSDQVVAIKTEIKIEEEMDVEDPYEQPRVKIKDEVVSDGESAYDESLVGSNIAMDLQEPELVQVKTEPETTPDDTKINNSEEVNDGEDDNSDSDDGNPSNENFDDDIPNYCKVCQTTFDSDEEYRWHYKSISTGGAKKPYGCCNCKRNFRDLTQIKVHQRRHTGEKPFSCNICNKKFSVNGNLTKHKLTHTGERPFECDTCEKKFTQYAHLEDHMKSHSGERAFKCDRCGSSFKRMGALRNHIRTHRTDCKNQQRDSICQICTRKVSSIQLEVHMMLHGYDKTTETYKCAICKEGLPTHDLLQEHIKKFHADEEKTNICIICSKVFTRRTDLYTHTKIHVDLKTYKCEVCHKAFHNSSNLRRHRISHQGLKPFPCEHCDRGFTSLQNRNRHQVLHDKIRMYPCDYCDEIFEESVAIREHVRSAHAGDRKFQCAFCDKKFRLREALTKHTIRLHSEHLDDSGVEKKGRNVEFINVEGGEVSQFKVEATDYEVSATNKLSVPAADAIIPISDIKLDYQEPELVQVKTESSLAADEIEMDIQENGINGETKNEEEKNDEDSADSEDDRSSDENFDDDVPNYCKVCKGSFDTDEEYRWHYKLVASGGCKKPYGCCNCKRNFRDLTQLKVHQRRHTGEKPYSCNICNKKFSINGNLTKHKLTHTGERPFECDTCEKKFTQFAHLEDHMKTHSVETRADTKKTKGRLRTTEMMTLRTILGLSIRDRVRSEEIRRDCGVYDIVRWTRTRRDKPFACDQCDMSFKTKACLKKHTRSHEETKITGKRRMTTQCEICNKRFTLAQIEGHMNKHHDIVSSYQCTQCEVFVKTYSCLQGHMKTMHADLKNYTCNICDKRYLTGHHLSRHLKTHAGIKPYICQLCMRPFASMQNMKRHLQVHRGEKPHACEICQKAFLTLENLKRHIRTHTKEKPYSCTVCDKQFSHSTTVKEHMMTHTGEKPYGCGICNKFFTLNKMLYKHIRDKHSDHLKQNDIKQMCRYVPNNIPNFVGIKTEIKEEEEEVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -