Tlur016630.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000864.1:518215-561279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 1.8 10.1 3.2 1 23 612 635 612 635 0.95 2 11 3.5e-05 0.0035 18.6 1.8 2 23 642 664 641 664 0.96 3 11 0.0015 0.15 13.5 1.7 2 23 695 716 695 716 0.97 4 11 0.2 19 6.8 0.5 1 23 793 816 793 816 0.96 5 11 0.034 3.3 9.3 2.6 2 23 824 845 823 845 0.97 6 11 0.019 1.8 10.1 0.2 2 20 905 923 904 926 0.94 7 11 0.005 0.48 11.9 1.7 1 23 999 1022 999 1022 0.94 8 11 0.0093 0.91 11.0 0.2 1 22 1029 1050 1029 1050 0.96 9 11 0.00056 0.055 14.9 3.5 2 23 1105 1126 1104 1126 0.96 10 11 0.011 1.1 10.8 0.1 2 19 1153 1170 1152 1173 0.93 11 11 0.00073 0.071 14.5 5.7 1 23 1219 1242 1219 1242 0.98
Sequence Information
- Coding Sequence
- ATGGAACCGGGTGAAGATAATTTAGGGCCTCAAATAATAGATAAGTCGCGAACTATTATCATAGAAAAGCCGTCTACCAGCGCTTCATTACGTGCAGAATTGAGAGAAAAAGAGTTGAGAGCACAAGAAACAACCCGACCTACCCAAACCCCAATGGAAACTTCGCTGGCCAATAATAATAGTCAAGAAGAGTCTGCCGACTTGAAAGATATCAGGAGGCAGATGGCGGATTTGACAGCGACGATGGGTAAGATGAGTTTGTTATTACAACACACTCAACAGGAGAACAAACGGCTGAGAGAAGAAATTGTGCCTAATTTAGGAAGAAATAGTAACAGCAGTATTCACAATTTTCTACCACAGCAGGAAAATTCTGCACTATCGCCTAGATTGTCCAGGGGCAGTAATGAACTGATATCTGTTTACAAAGTATTAAAAATCATCAAGAGTATGACGAATGAATGCTTTATTAATGGAGTGCAGTACAAATGTCGTACTTGCTTCGATCCTGCAACAACAGTATATCCTCTTTCTGACGGGTGCAGCAACTCCAAGACTTGGAAAGATTTACTGAATGATATTGTTCACTTAAAGATAAAGGATGACGAGTTACTTCCAAAAACCATTTGTTTGAAATGTTTGGAAAAGCTTATCAGCTATTACGATTTTATACTTCATATTCAAAATGTGAATGAAAAGTACCACCAACTCTTGGAAAGTGCCAAAAATTCTTCTCAAAATGATGGTCTTGCCAGCAGCTCTAGTAATATTACAGAACGCTTGACAGAATCTGCCGCTGCTTTGCCCTTGGATCAGTATGTTTCGAAAATTAAGTTTGAAGACGAGTTCCTCACGTCTTATGATGATCTCTTAAATAGTGACGATAGAAAAAACGATTCATGCAAAGAAGATACTTTTGATCCTTATGTGGAATATTTGAAAGAGGATATTGAGCTCTCTTCAGATAACTTGCAATACCAACAAAGATCCTCAAATGAAGAAATAAATCAAGATCTTAAAGATGATGTTAACTATGATGATTCTGATAACAGTTCTACATCTACGGCGGCCGAAAGGGATTATCTGATTGAAAAGAGAAAGAGGGAATATGAAATGAAGAAGAGCGGGAAGCTACGTTCTTGTGTATTCCGTGCACTCGATCCAGATGCAGTTGGTACTGTCGGCTTTACGCTGACTGGCGCATCCTTCTCGAGCTCGGTATTAATGGGTGCAATTGGCACGGCTGGTTTTACTCCAGCTGGCGCACCTTTCAATTGTTTATTGGGTGCCGTTGGCACTACCGAGGATTTCCCGGTTGGCACACCCAGAGTTTTCTTGGCTGATTTCTCAGCTCTAATTTTGGCTGTAGCAGATGTGCTTGGACTACAGTCCAAGGACACGCTACGAGTTAACCTTGCCTTTCCTAGTGGAATGGCAAGGTTTAGAGTAACTGCCCAACAGGATTCCCTTCAAAGTTGGAAGGTCAATTCATGTTGGATAGCATCTCCCCATCATGATAACAAACATGGGTGGAATGTTTCTCATGATCGGGAGTTCCACTTGCGGTTACCTCCCCCATGGTTCACCCAACACTGGTGCCTCTTTTCCAGTGTACGCCATTGTCGATCCCCAAATGAAGAAATAAATCAACTTCGTGGAGATGATAACGATTATGATTCCGAAAACAGTTCTACATCTACGGCGGATGAAAGCGATCATATGTTTGAAAAAAGAAAGAAGAAATATAAAATGATCAAGAGAGGTCAGCAATTCGATAAAAAGAAGAAGGACGGAGATAAAATTGATGAACAAATTGAAAAAGTCCACGGTAACTTTGTATGTGCGGTGTGCAAAAAATCATTTACTATGCAGAAACTATGTCGCAGGCATATACAATTGACGCACAGAATAAAACAATTGTCCCAATGCCACTTTTGCGACACCATTTTTAAATATAAGTCCAATTTAATTTCACATATTGAACGAGTACATCTTGGCGAGTCATTTGAATCCAATACAAAACAAATAGTTCGCTTGTTTGGAGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAGCGGAATGTAAACTGTGTGATTCTAGTTTTACGAGTAAAAAAACACTTCTTCAGCACTTGGATAAGCATAGTGAGATCAGTACTCTTCACAGCTTAAAATTAAGCAGTGATGTTATTCAGCGTTGGTTTTCAAATATGAGCAATTTGCAATTCATAAAAACATTGATATGTAAAGATGTTCGAGAAAAAAACTGTGTCAAATATTATACAATTTTAAATGACTTTTCCTATGAAGTGTCCATTAGTGATACGGATGCCGAAGATTTGGAAGAAGAAACAGAAATACCTGTCAACAAATATAAATGCGAATTGTGTGCAAAAGAGTTTTTGTACAAATATCAAGCGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGACATTCCATTGAAGTGCAGCCATTGTAATCTGGAATTTATATCAATAAAAATGTATGAACAGCACAAGCAAACTCACTGTGGGCATGAACATAAACTACTGAATTGCCAAAATTGTAATGGCATGTTTGTCTGGCTCGAAAATATGAAAAGACACAATTGTGTTACTAAAATATTTGATGTTGAAAAATTTCTGAAAGATGAAATTAGTGTAAAGTGTAACGAAGTAATCCGTTCATCGCCAAAAGCTATCATAAGATGTGGCCTTTGTGAAATGACCTTTGTAAAATTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGTACAACTGGAGTTGACTTTGAGGGTTGTTTTTATGTAAATCAGTTTGAAAATTTAAACAGCAAACGCGAATTGTTGCAACAGAAGATTAAAAATGCATTTACGGAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATACCGATGAAGATGATGCTGATGTTGAAAAAAGTTATTTGTGTGAACTTTGCTATGAAACGTTTAAGAAGCGAAAACTTCTTTTAAATCATCAAAAGGAACAACATAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGTTAGAACAACATATAAAAAGGGAATGTTGGAATGAACATCGAAGAGTAGCTGAACAATGCGATTGTTGTAAAGAACGTTTTATATGGCCGGAAAACATATTGAGGCATAAAGAAATACAGCGATACATACGTATCAAAAATTCATTGCCTACGAACATGTGTCGTGACAATATCCAAATTTGCTATTGTTTCTTATGTCCTAAACATTTCTCTAATGCTGATCTTTTAAATGATCATTTGATGCGCCATCGGTTAACACCATCCATCATCAAAACTGTTGCAAGCACAATACATTCTACATGGTGGCCAAATGGCAAAAAGATAATAAAATGCAAAATATGTGGCCAAGATTTTTCAAGTATGGCCGGATTAAATGAACACTTCTCTCTAAAAAGTCTTAAAAACTTGTGTGGTGCCAAGCAGCATTGTCTGGCAAATTACTCGATTACTAACCAAATGGGGTTTGAATTACATTTAGAGCTGGATTCAGAGACAGAAACTGAAGAAAATGAAAATATATTGCCATATACATGTTGCATGTGTAGTAAATCATTTAAACGAAAGTTTCAAATAATTCAACATCAAAGATCCATGCACAATTATGAAATGTTTGAACTGAAATGTGAACGTTGTGCTTTTAGAACGGTATCAGAGGTAATGACAATATATCTTAAATTTTATAAATCGTGTTAA
- Protein Sequence
- MEPGEDNLGPQIIDKSRTIIIEKPSTSASLRAELREKELRAQETTRPTQTPMETSLANNNSQEESADLKDIRRQMADLTATMGKMSLLLQHTQQENKRLREEIVPNLGRNSNSSIHNFLPQQENSALSPRLSRGSNELISVYKVLKIIKSMTNECFINGVQYKCRTCFDPATTVYPLSDGCSNSKTWKDLLNDIVHLKIKDDELLPKTICLKCLEKLISYYDFILHIQNVNEKYHQLLESAKNSSQNDGLASSSSNITERLTESAAALPLDQYVSKIKFEDEFLTSYDDLLNSDDRKNDSCKEDTFDPYVEYLKEDIELSSDNLQYQQRSSNEEINQDLKDDVNYDDSDNSSTSTAAERDYLIEKRKREYEMKKSGKLRSCVFRALDPDAVGTVGFTLTGASFSSSVLMGAIGTAGFTPAGAPFNCLLGAVGTTEDFPVGTPRVFLADFSALILAVADVLGLQSKDTLRVNLAFPSGMARFRVTAQQDSLQSWKVNSCWIASPHHDNKHGWNVSHDREFHLRLPPPWFTQHWCLFSSVRHCRSPNEEINQLRGDDNDYDSENSSTSTADESDHMFEKRKKKYKMIKRGQQFDKKKKDGDKIDEQIEKVHGNFVCAVCKKSFTMQKLCRRHIQLTHRIKQLSQCHFCDTIFKYKSNLISHIERVHLGESFESNTKQIVRLFGERLYSKPLLLPRAECKLCDSSFTSKKTLLQHLDKHSEISTLHSLKLSSDVIQRWFSNMSNLQFIKTLICKDVREKNCVKYYTILNDFSYEVSISDTDAEDLEEETEIPVNKYKCELCAKEFLYKYQAFAHLREDHLNEDIPLKCSHCNLEFISIKMYEQHKQTHCGHEHKLLNCQNCNGMFVWLENMKRHNCVTKIFDVEKFLKDEISVKCNEVIRSSPKAIIRCGLCEMTFVKLRDLRQHMPLHADGTTGVDFEGCFYVNQFENLNSKRELLQQKIKNAFTERQISQLYQAIDKDGKEMDISDSDTDEDDADVEKSYLCELCYETFKKRKLLLNHQKEQHKDVSMPFTCKECKMQYVSIDLLEQHIKRECWNEHRRVAEQCDCCKERFIWPENILRHKEIQRYIRIKNSLPTNMCRDNIQICYCFLCPKHFSNADLLNDHLMRHRLTPSIIKTVASTIHSTWWPNGKKIIKCKICGQDFSSMAGLNEHFSLKSLKNLCGAKQHCLANYSITNQMGFELHLELDSETETEENENILPYTCCMCSKSFKRKFQIIQHQRSMHNYEMFELKCERCAFRTVSEVMTIYLKFYKSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -