Tlur016632.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000864.1:624809-639997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.4 2.4e+02 3.4 0.9 3 21 60 78 58 79 0.93 2 21 0.0011 0.1 14.0 0.5 1 23 246 269 246 269 0.92 3 21 0.21 21 6.7 2.3 1 23 318 341 318 341 0.91 4 21 0.11 11 7.6 3.4 1 23 347 370 347 370 0.98 5 21 0.012 1.2 10.6 0.5 2 23 401 422 400 422 0.96 6 21 0.076 7.4 8.2 1.3 1 23 499 522 499 522 0.97 7 21 0.44 43 5.8 3.4 2 23 530 551 529 551 0.97 8 21 0.029 2.8 9.5 0.2 2 20 611 629 610 632 0.94 9 21 0.0068 0.66 11.5 2.2 1 23 705 728 705 728 0.94 10 21 0.00052 0.05 15.0 0.9 1 22 735 756 735 756 0.96 11 21 0.0021 0.2 13.1 2.0 2 23 824 845 823 845 0.96 12 21 0.011 1 10.8 0.1 2 20 872 890 871 892 0.93 13 21 0.00077 0.075 14.4 5.5 1 23 943 966 943 966 0.98 14 21 0.015 1.4 10.4 0.5 1 23 1003 1026 1003 1026 0.97 15 21 2.3 2.2e+02 3.5 0.2 2 23 1086 1106 1085 1106 0.92 16 21 0.0032 0.31 12.5 2.5 1 23 1112 1135 1112 1135 0.98 17 21 5 4.9e+02 2.4 0.1 5 23 1175 1193 1174 1193 0.86 18 21 4.5e-06 0.00044 21.5 0.9 1 23 1199 1221 1199 1221 0.99 19 21 1.5e-05 0.0015 19.8 2.6 1 23 1227 1249 1227 1249 0.99 20 21 0.00012 0.011 17.0 2.1 1 23 1255 1277 1255 1277 0.96 21 21 0.088 8.6 8.0 1.9 1 22 1283 1304 1283 1307 0.90
Sequence Information
- Coding Sequence
- ATGACGAATGAATGCTTTATAAATGGAGTGCAGTATAAATGTCGTACTTGCTTCGATCCTGCAACAACAGTATATACACTTGCAGAGGAGTGCAGCAACTACGGAACTTGTCAAGATTTCTTGAATGACATTGTTAAGTTAAAGACAAACGACGACGAGTTACTTCCAAAGACGATTTGTTCGAAATGTTTAAAAAAACTTGTCAGCTGCTACGATTTTATACTTCATATTCAAAATGTGAATGAAAACTACCACCAACTCTTGGAAAGTGGCAAAAATTCTTCTCAAAATGATGGTCTTGCCAGTAGCTCTAGGAATATTACAGAACGTTTGGCAGAATCTGCAACTGTCTTGCCTTTGGATCAGTATGTTTCGAAAATTAAGTTTGAAGACGAGTTCCTCATGTCTTACGATATTGTCTTAAATAGCGACGATAGAAGAAACGATTCGGTCAAAAAAGATACTTATGACCCTTATATGGAACATGTGAAGGAGGATATTGGGCTATCTTCAGATAAGTTGCAATACCAAGGAAGATCCCCAAATGAAGAAATAAATCAAGTTCTTGGAGATGATGCTAACGATAACGATTCCGAAAACAGTTCTACATCTACGGCGGACGAAAGCGATTATCTGATTGAAAAAAGAAAGAAGAAAGATAAAATGAACAAGAGAGGGCAGCGATTGGATAAAAAGGAGAATGACGGAGTTAAAATTGATAAACACTACAAAAGTTTTCTGTGCTATATATGTAATAAATCGTTTCCGGAACTAAGCAGACTACGTGAGCACATGCAAGATATGCACGAAAACAAAACTAATCCAAGAACTAAATCTGGATCCTCATCCTCCAGTGAAAGTGAACATGACCTACCCAATAGTCAGACATTCGGAAAGAAATCTGAAGAACAATTCTCCAAATACTTTCAAATCGAAAAAGTCAACGGTAATTTCGTATGTGGGGTGTGCAAACAATCATTTACGCTACAGAATTCTTGTCGCAGGCATATAGTTTTAAAGCACAGCCAAGCAAAATTGTTCCAATGCCGATTTTGCGACAGAAGTGTACGATGTAAGGAATATTTAAGTGCACATATTAAACGTCTACATCCTGGCGAGTCGTTTGAATCCAATACAAAACAATTAGGTCGTCTGTTTGGAGAACGTTTGTATAGCAGACCACTTCTGTTACCACGACTGGAATGCAAGCTGTGTGTTACTATTTTTGTAACTAAGAAAAAACTTCTTCAGCACTTAGATAGCCATAGTGAGGCCAGTACTCTTCACAGCTTAAAATTAAGCAGTGATGTTATTCAGCGTTGGTTTTCAAATATGAGCGATTTGCAAGTCATAAAAACAATGATATGTAAAGATATTCGAGAAAAACACTGGTTCAAATATTATACAATTTTAAATGACTTTTCCTATGAAATATCCATGAGTGATACTGATGCAGATGATTTGGAAGAGGAAGCAGAAGTGCCCGTCAACAAATATAAATGCGAAATGTGTGCAAAACAGTTTTTGTTCAAATATCAAGTATATGCTCATATGAGAGAGAATCATTTGGACGAAGAAACTCCTTTGAAATGTAGGCATTGCAAGTTGGACTTTATATCAATAAAAATGTATCAAGAACACAAACAAACTCATTGTCGAAATGAACATAAAGTATTGCTTTGCCCCAGTTGCAATGGCAAGTTTGTCTGGCTCGAGAATATGAAAAAACACAATTGTGTTACGAAAGTTTTAGATATTGAAAAATCTCTAAATGATAAAATTAGAGAAAGGTATAATGAAGTAACGCGTTCATCGCCAAAAACTGTCATTAGATGTGGTCTTTGTGAAATGACCTTCGAAAAGCTGCGGGACTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACTGGAGTGGACCTTAATGGTTGTGTTTATGTAAATCAATTTGAAACTTCATCCACCAGTCGCGAATTGTTGGAACAGAAAATTAAAAATGCATTTACGAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGTACGGCAAAGAAATGGACATTTCAGATTCGGATACCGATGAAGATGATGCTGATGTTGAAAACAGTTATTTGTGTGAACTTTGCTATGAAACGTTTAAAAAGCGAAGACTGCTGTTTAATCATCAAAAAGAACAACACAAGGATGTTTCAATGCCTTTTACTTGCAAGGAATGTAAGAAACAGTATGTTAGTACTGATTTGTTACAACAACATATAAAGAGGGAATGTTGGAATGAACATCGAAGAGTTGCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATACAGCGATACACAAGTATCAAAAATTCGCTGTCTGAAGACCTGTGTCGTACCCAGGCAAAGAAAATCATGCCTTCATCAAGCTCAAGTGACAATATCCAAATTTGCTATTGTTTCTTATGTCCTAAAAATTTCTCTAATGCTGTTTTTTTAAATGATCATTTGATGCGTCATCGGTTAACATCATCAACCATCAAAACTGTTGCAAGCGCAATACATTCTACATGGTGGCCAAATGGCAGAAAGATAATAAAATGCAAAATATGTAACCAAGAATTTTCAAGTATTGCCAAATTAAATGATCACTACTCTCTAAAAAATCTGAAAAACGTGTGTGGTGCTATGCAGCATTCTCTGGCAAATTACTCGATTACTAATCAAATGGGGTTTGAATTACATTTAGAACTGGATTCGGAAACAGAAACTGAATATAACGAAAATGAAGAAAATAAAAACTTAATGCCATATAGTTGTTGCATGTGTAGTAAATCGTTTAAGCGAAAATATGAAATATCTCAACATCAAAGATCCATGCACAGCTATGAATTATTGGAACTGAAATGTGAACGCTGTGTTTTTAGAACTGTATCAGAGaaagttttaggttatcatagaagaagccagtgttttgatgttgagaaaaaataccaatgcgatcagtgtaatttcaaatttatgtggcaagagaacctcgaagagcatatttcgatatttcataattcaaaCGTTTTCTTCAAAACATTGGATGCAGCTAACACGTCGTTTTTAAATGACGCAAGCAATGTAAATGCTCAATGCCTTCAATTGAAAGAAAATTCAAATAATGATATGTCATTAGCATTACATCAAAACTATTCAGATGCAGGGGAGTGCATTCAATCTAAAGATACAATACAATGTCTAATTTGTGGAATTTACATTAACAAAAATGATTATTCAGAACATATTAAGAGGCACAAATGTGACAAATCTTACAAATGCACATTTTGTGAAATGGTTTTTTTAACACGTGCCTCTTTAAGGAAGCATAAGCGCATGCGCCATAAACTTCATTCGGGTGGTGAAAGTCCAAAAGGACAAATTACTTTATTACCGACGTTAGAAAAGAATTTGGAGCCAACTGGTTCTACACAACATCCACAAGGTACGAGAAAACTCAAATTATGCCCAATTTGTGGTGTATATAGAAGAAATATTGAAAtacatattagaagccacatggacgagacgccattcaagtgcgatctttgtgataaaatctttagcagcgaaattaatttatatgttcatcggcgcacacactctaataaacgtccttttaaatgtacactttgtgagaaagcctttgtccatgaatacagattaaaagctcacatgcgctctcacactggcgagcgtccatacgagtgcactgtttgtcagaaaaaatttatcaatttggccaatttgaagcatcattcacttaatcatactggtaagaagtcctttatatgtgagatttgcaaacgaggctttaaatgtgcaccatatctcaaaagacatcgtatcagaaagggccatcattcagaaAATAATTGA
- Protein Sequence
- MTNECFINGVQYKCRTCFDPATTVYTLAEECSNYGTCQDFLNDIVKLKTNDDELLPKTICSKCLKKLVSCYDFILHIQNVNENYHQLLESGKNSSQNDGLASSSRNITERLAESATVLPLDQYVSKIKFEDEFLMSYDIVLNSDDRRNDSVKKDTYDPYMEHVKEDIGLSSDKLQYQGRSPNEEINQVLGDDANDNDSENSSTSTADESDYLIEKRKKKDKMNKRGQRLDKKENDGVKIDKHYKSFLCYICNKSFPELSRLREHMQDMHENKTNPRTKSGSSSSSESEHDLPNSQTFGKKSEEQFSKYFQIEKVNGNFVCGVCKQSFTLQNSCRRHIVLKHSQAKLFQCRFCDRSVRCKEYLSAHIKRLHPGESFESNTKQLGRLFGERLYSRPLLLPRLECKLCVTIFVTKKKLLQHLDSHSEASTLHSLKLSSDVIQRWFSNMSDLQVIKTMICKDIREKHWFKYYTILNDFSYEISMSDTDADDLEEEAEVPVNKYKCEMCAKQFLFKYQVYAHMRENHLDEETPLKCRHCKLDFISIKMYQEHKQTHCRNEHKVLLCPSCNGKFVWLENMKKHNCVTKVLDIEKSLNDKIRERYNEVTRSSPKTVIRCGLCEMTFEKLRDLRQHMPLHADGKTGVDLNGCVYVNQFETSSTSRELLEQKIKNAFTKRQISQLYQAIDKYGKEMDISDSDTDEDDADVENSYLCELCYETFKKRRLLFNHQKEQHKDVSMPFTCKECKKQYVSTDLLQQHIKRECWNEHRRVAEQCDCCKERFIWPENMLRHKEIQRYTSIKNSLSEDLCRTQAKKIMPSSSSSDNIQICYCFLCPKNFSNAVFLNDHLMRHRLTSSTIKTVASAIHSTWWPNGRKIIKCKICNQEFSSIAKLNDHYSLKNLKNVCGAMQHSLANYSITNQMGFELHLELDSETETEYNENEENKNLMPYSCCMCSKSFKRKYEISQHQRSMHSYELLELKCERCVFRTVSEKVLGYHRRSQCFDVEKKYQCDQCNFKFMWQENLEEHISIFHNSNVFFKTLDAANTSFLNDASNVNAQCLQLKENSNNDMSLALHQNYSDAGECIQSKDTIQCLICGIYINKNDYSEHIKRHKCDKSYKCTFCEMVFLTRASLRKHKRMRHKLHSGGESPKGQITLLPTLEKNLEPTGSTQHPQGTRKLKLCPICGVYRRNIEIHIRSHMDETPFKCDLCDKIFSSEINLYVHRRTHSNKRPFKCTLCEKAFVHEYRLKAHMRSHTGERPYECTVCQKKFINLANLKHHSLNHTGKKSFICEICKRGFKCAPYLKRHRIRKGHHSENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -