Tlur015983.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- grau
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000815.1:192914-198912[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.39 38 5.9 0.1 3 23 258 279 256 279 0.93 2 10 0.021 2.1 9.9 0.2 6 23 288 305 288 305 0.97 3 10 0.065 6.3 8.4 5.6 2 23 312 334 311 334 0.95 4 10 1.9e-06 0.00019 22.6 0.8 2 23 340 361 340 361 0.97 5 10 1.1e-06 0.00011 23.4 0.6 2 23 367 389 366 389 0.96 6 10 0.15 14 7.3 0.6 3 23 395 414 393 414 0.88 7 10 2.8e-06 0.00027 22.1 3.1 3 23 424 445 422 445 0.97 8 10 2.7e-06 0.00026 22.2 0.1 1 23 454 477 454 477 0.97 9 10 0.00066 0.064 14.6 0.2 2 23 484 505 484 505 0.97 10 10 0.002 0.2 13.1 0.5 1 22 511 532 511 532 0.96
Sequence Information
- Coding Sequence
- ATGAGCTGCCTTTTGTGCTTAAAAGTAACTGAAAGTTATAAGGATTTGATAGTTTTTAACTCCAGCCATTGGCAGGAACTAAACATGCAGTATATTATAGAAAAGCATCTTTGGAAGTTGGAAGTTTTAAATAGTCAATCCTATATATGTCAATCGTGTTGGCAAGAATTATACAACTTCCATAAGTTTTATTCAAAACTTGAAAAAGCCCGTTCAAATTTAAATGATTTATTGGCCACGGAAGAGGTTACCACAGAAGCTATTGAAAAAGGAAACGAAGAACCTGAACTTGAAATGTTATGTTTTAAAGAGGAATATTCTATAGATGTATTTGAAGAAGAAGATGAGGAGGAAGCAGCAAGTTATCTTAAAACTAATAGCAAGCGTAAATGTTCTAGAAAGAAAAGTACAAATGACAACAATGCAAGAAAAAGGCCGAGGAAAAGATCCAACAAAGAACAAAGTAATACTGAAATACATGAACTAAAATCCGTTGAAAATCCAGATGAAGTTGAAATAAAGTTAGAAGATGAAGGAATAGAACAAAACGCTAAAGGAAACAAAATGGAATTCGATGAAAATATAGTAATTAAAACAGAAGTAGAATTTATAACAATAGAAAATGACGTTAAACAAATCAAAATGGAAGAAGACGATCAAAGTGATAGTTCCGCAAATGACGATAATACTTCATCCGATGAGTCTGATTCAGATCAATTAAATAAATTATCGGATGAAGACAAATTCATAGCTGAAAATTTTCAAATCAATTGTGACATTTGTAAAATCCCACTGGATACATTTTCCGCAATGCTCAAGCATTACAAAGACGAACACAACCAGCGTGGACATGTTTCTTGTTGTAACGCTACCTTTTCCCGGCGTGTGGAACTAATGGATCATATCAAGTTTCACCAAAATCCTGAATATTTAAAATGTAAACACTGTGACAAAGTATTCCTTAAATGCCGACGGCTAAAGATCCATATAAAGCAAGTTCATGAGGCACCGGCTGCTGAATGTAATATTTGTGGCAAAAGTTATAAAAATGAAAGGGGGCTAAAAACACACATGAAACTACACAAAACTGAAGATATAACTTGTGAAAAATGTGGTAAATCCTATTCATCTAAATTCTCCCTAGACAATCACATGAGAGTTGTTCACATTACAAATATAATTTGCCATTTATGTGGCAAATCTGTTATAGTACCCGACTTAAAACGTCATATGGCAGGACATGAAGAGAAACCACCACCAAAGGTAAACTGTAAAATTTGCGATCGGGAGTTTTCATTTAGGAGTTGTTTAATTCGACACATGCGTACGCAACATCCACCGAAAGGAGCTAAAACTGAATTTAAATGTGCTGAGTGCCCAAAAGTGTTTGCAGCTGCTTATAATCTTAAGACGCACATAAGACAAGTGCACGAAAATGCATATGAAAGAAAGTGTGTATTGTGTGGTAAAACAGTCAAAGGATCCGTCGCCCTAAGGGAGCACATGTCAAGGCATAAGGGTGAACCTTTATACGTTTGCGGCTTGTGTCCTAGAAAATTTTATGCAAGTGGAAACTTGCACTCGCATCGCAAAACATGTTCTAGAAAACAAAAAGAAAAATGTGTAACAAAAAGAACGCAAGATGAATAA
- Protein Sequence
- MSCLLCLKVTESYKDLIVFNSSHWQELNMQYIIEKHLWKLEVLNSQSYICQSCWQELYNFHKFYSKLEKARSNLNDLLATEEVTTEAIEKGNEEPELEMLCFKEEYSIDVFEEEDEEEAASYLKTNSKRKCSRKKSTNDNNARKRPRKRSNKEQSNTEIHELKSVENPDEVEIKLEDEGIEQNAKGNKMEFDENIVIKTEVEFITIENDVKQIKMEEDDQSDSSANDDNTSSDESDSDQLNKLSDEDKFIAENFQINCDICKIPLDTFSAMLKHYKDEHNQRGHVSCCNATFSRRVELMDHIKFHQNPEYLKCKHCDKVFLKCRRLKIHIKQVHEAPAAECNICGKSYKNERGLKTHMKLHKTEDITCEKCGKSYSSKFSLDNHMRVVHITNIICHLCGKSVIVPDLKRHMAGHEEKPPPKVNCKICDREFSFRSCLIRHMRTQHPPKGAKTEFKCAECPKVFAAAYNLKTHIRQVHENAYERKCVLCGKTVKGSVALREHMSRHKGEPLYVCGLCPRKFYASGNLHSHRKTCSRKQKEKCVTKRTQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399724; iTF_01399727; iTF_01399774; iTF_01074719; iTF_01398803;
- 90% Identity
- iTF_01399724;
- 80% Identity
- -