Tlur000823.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000028.1:1691455-1693815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.043 4.1 8.9 0.4 1 23 206 229 206 229 0.94 2 12 2.5 2.4e+02 3.4 0.9 1 23 389 411 389 411 0.93 3 12 0.00022 0.022 16.1 2.8 2 23 414 435 414 435 0.97 4 12 1.1e-05 0.0011 20.3 0.2 3 23 443 463 441 463 0.98 5 12 2.2e-06 0.00021 22.4 5.8 2 23 470 491 469 491 0.97 6 12 2.4 2.3e+02 3.4 0.1 5 23 504 522 502 522 0.96 7 12 0.012 1.2 10.6 0.1 2 23 561 581 560 581 0.95 8 12 6.9e-05 0.0068 17.7 0.3 1 19 587 605 587 609 0.95 9 12 1.5e-06 0.00014 23.0 1.8 1 23 617 639 617 639 0.99 10 12 5.2e-05 0.0051 18.1 6.5 1 23 645 667 645 668 0.96 11 12 0.00031 0.031 15.7 6.4 1 23 673 695 673 695 0.99 12 12 0.00084 0.081 14.3 5.8 1 23 701 723 701 724 0.96
Sequence Information
- Coding Sequence
- ATGTACGCCGATATTTCGGCACGTTTCTTTAAGACAACGTTTCCAGGCATATTTCCGCATGACAACGGTTGGAATCACGAAGAGTATTTTGGCGTACAGGATTTGAGCGCATCGACGAGTGGTCTCGCTACTAACAGCAGCAATAGTAGAATGAAAAGTTTTGAACAAACCAATAGCAGCACCAACAACAGCAATGGAATGGGATTATTTTCCCAAAATTCAAATGATAATTGCAATATTGATGTTATGCCATCAACGTCAGCTAAAATACGTAAGAGACGTAAGCGTAGTTCTCAAGACGGCAAAACGTCACAAGCTAATGGAAAACGTACGCAACCCACAGCGACTGTAACCTCTCAACAAATGCTAATTCAACATCAAAATGAGGTATCAGGCATTGAGTTTAATTTCCCAcatcatcagcagttgaatttacaacaacaacagcatctgcagcaaccaagcacatctactgcatttttgacaggaccatcaaacgaaggtactgatttaacaactggatttatgacacagcaacagcagcaacagcaacaacagcagcaacaacaacaacagcaacaacaacaatcacagcaaaaacagcgcaCAAAAGTCTACGAATGTGGTCATTGCAATGCCAAGTACCCCAAACTTAAAGATCGCAATGCTCATATGATTGATGTTCATAATTACATAAGACAAAATAGAAGATTAGTACATCCTACAAGTGGGCTTGTCACTCTCCTTAACAATGCCGATATGCAAGATGTTGCTCTACCCACAACAAGTGCAGCTAGCAGCTCTTTAATGCCTGCTTTACAAAATGTGGAATGTATGGAGGATTCTAAACAGGGTATTGTAAAATTGGAAAATGAAAATCCCCCACGCGATCCGCCTGGAGTAGAACCAATCAACGCCACCTTGAGTGCTAAAACTGAAATTATGGAAGACGATAAACAAAGTCTTGCCCTGGGCGCAAAAGTTGAAGGAATTATTGAATACGACACTAAACCACCAACCACCAGGAGTTTGCCGTTGTCGCTAACGACGTGCAGCAGTAAATTAACAACACTTTATCGTATGCTGGTGTCGTTTAATATGACAACATTAAAACAAAACCAAAACCTTTCGGAATTCGATGAGAATCTTATAAAATCGTCAATATTTTTTTGTTACATTTGCCGTCAGAATTATAATTCAGTAAAATTGTACGATGCTCATTTGACTGAACATCCCGCTGAGTGTTTTACGTGTGGGAAAAAATTTCAGCGGTGGAAAAACTTTTCATTGCATTTGAAGAGACACTTAGGTTGGAAGGAATTTGGTTGTACTGTATGCGATAAGAAGTTTGTTGTTCGTAGTGCTCTCGTTGAACACATGCGCATGCATTCCGGACTGTCACCGTTGAAATGCAAAGTTTGTGGTAAACATTTTAAGCGTTATTCGAACTTAACCCAACATCGGAAGCGGCATATGAAGCAAGTTATTCGTAGGAAAGAGTATGTTTGCTATTGTGGAGAAGTCTTACCATCTAAAGCACGTTTCTTGTGGCATAAAGAAACGCACGATTCAAAACCAAAATGCTGTCCGCATTGTTGTGACCGTTTTGTACATGTCAACTCTTTACGTAGACACATACGTCTAGCTCATTCGGATAAATTTGATTATGCTGAACCGATGGAGTGCCCCATTTGCAAGCAAAGATTTGCTAAAGCTTCTATGAAAGCTCATATAGCAACGCATTCCACAGAAACACAGTACGATTGTGCTATTTGCAGCAAGTCTTTCTCAACAAAGTGGAATTTAAAAATACATTCCTGGGTACATGCAAATCGCACCGCTAAACCTTTCAAATGTGAACACTGTCCCAAGGCATTTGTGCGTGAGGTTGACTTTAAGAATCACATGAATTCCCATAAACAAATTAAACCATACACGTGTGAAGTATGTGGTTGTAAGTTTATACGCAAATATAATTATATGCGGCATAGAAGAGAGCACCATGGCAATAAAAAGTATACCTGTGATCTATGTAAAAAGTCGTTCCATCGCCATTATTATCTCATCGAGCACAGACGCATTCACACCGGCGAACGACCTTTTCAATGTTCGATATGTGGCAAAAGTTCAACAACTAAAACTAATCACAACAAACACCTAAAAATCCACCATTCGCGTGATCCCTTTACAGTGGAAGTTTAA
- Protein Sequence
- MYADISARFFKTTFPGIFPHDNGWNHEEYFGVQDLSASTSGLATNSSNSRMKSFEQTNSSTNNSNGMGLFSQNSNDNCNIDVMPSTSAKIRKRRKRSSQDGKTSQANGKRTQPTATVTSQQMLIQHQNEVSGIEFNFPHHQQLNLQQQQHLQQPSTSTAFLTGPSNEGTDLTTGFMTQQQQQQQQQQQQQQQQQQQSQQKQRTKVYECGHCNAKYPKLKDRNAHMIDVHNYIRQNRRLVHPTSGLVTLLNNADMQDVALPTTSAASSSLMPALQNVECMEDSKQGIVKLENENPPRDPPGVEPINATLSAKTEIMEDDKQSLALGAKVEGIIEYDTKPPTTRSLPLSLTTCSSKLTTLYRMLVSFNMTTLKQNQNLSEFDENLIKSSIFFCYICRQNYNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHMKQVIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYAEPMECPICKQRFAKASMKAHIATHSTETQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -