Tlur015981.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000815.1:148962-183270[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.2 1.2e+02 4.4 0.3 2 23 343 365 342 365 0.94 2 22 0.043 4.2 8.9 0.0 6 23 374 391 374 391 0.99 3 22 4.5e-05 0.0044 18.3 5.3 1 23 397 420 397 420 0.97 4 22 5.2e-06 0.00051 21.3 0.2 3 23 427 447 426 447 0.98 5 22 0.023 2.3 9.8 4.8 2 23 455 476 454 476 0.96 6 22 0.00091 0.089 14.2 0.8 3 23 483 503 482 503 0.96 7 22 7e-06 0.00068 20.9 1.3 2 23 512 533 511 534 0.94 8 22 3e-05 0.003 18.8 0.7 1 23 543 566 543 566 0.98 9 22 0.00032 0.032 15.6 1.9 2 23 573 594 573 594 0.98 10 22 0.00079 0.077 14.4 0.3 3 23 601 621 600 621 0.96 11 22 0.0043 0.42 12.1 5.0 2 23 630 651 629 652 0.94 12 22 6.8e-06 0.00066 20.9 0.3 1 23 661 684 661 684 0.98 13 22 3e-05 0.0029 18.9 1.3 2 23 691 712 691 712 0.98 14 22 0.041 4 9.0 1.8 1 21 718 738 718 739 0.94 15 22 2.1 2.1e+02 3.6 0.6 6 23 1111 1128 1111 1128 0.93 16 22 8.7e-05 0.0085 17.4 2.6 1 23 1134 1157 1134 1157 0.96 17 22 9.8e-05 0.0096 17.2 2.8 2 23 1163 1184 1163 1184 0.96 18 22 2.4e-06 0.00023 22.3 2.0 2 23 1190 1212 1189 1212 0.95 19 22 0.11 10 7.7 0.3 3 23 1218 1237 1216 1237 0.95 20 22 7.7e-05 0.0075 17.6 1.6 2 23 1246 1268 1245 1268 0.92 21 22 1.9e-05 0.0018 19.5 0.1 1 23 1277 1300 1277 1300 0.97 22 22 0.00031 0.03 15.7 0.9 1 22 1316 1337 1316 1337 0.96
Sequence Information
- Coding Sequence
- ATGAATTGCCTTTTGTGCTTAGAAGTAACTGAAAGTTATAAAGATTTGATAGTTTTTAACTCCAGCGAATGGCAGGAACTAAACATGCAGTATATTATTGAAAAGTATCTTTGGAAATTGGAAGTTTTAAATAGTCAATCCTATATATGCCAAGCGTGTTGGCAAGAATTATACAATTTCCATAAGTTTTACTTAAAACTTGAAAAAGCCCACTCAAATTTTAATGATTTATTGAACACCGAAGAAGTTACCAAAGAAGAAGTTGAAATAGGAAACGGAGAAGAAGCTGAGAAAATTTTTAATATTACTGCAAAAGTATCGCAAGCTGAACCTGAAATTTTATTTTTTAGCGAGGAATATCCTACAGATATTTTTGAAATGGAAGATGAAGAGGAAGTAAATCATCTTAAAATAAATACCAAGCGTAATAGCTATGAAAAGAAAAGTTCACAAAACAAAAACATTGTGAAAAATAGTTCCAGGAAAATATCTTCGAACGATCAAATAAACGAACTAAAATCCAATGAAAATCCAGATGAAATTCATAGCAAATTAAAAACAGAAAGAATAGAAAACGACAAGTGCAATGAAAATGGAGCTGAAATTGATACAGAATTAATAACAATAGAAAATGATGCTGAAGACAACAAAATGGAAGATGAGAAAGAATTTACTTGTCTTAAAAGCAGTACTAAGGGTAAATGCTCTAGGGAGAAATGTACAAATGATAACAAAATTATTGCAAGAAAAAGTTTGAGGCAAAGATCCAGCAAAGACAAAAGTAAAACTGAAATTGAAATGAAAAAACTGAAATCCCATAAAAGTCCAGATGAAATTGACAAAAAGTTAGAAGCTGAAAGTATAGAAAAAAACGCTATAGATGAACTTAAAACTAAATTAGAATTAAAAACAACAGAAAATGACGCTAAACAAGACAAAATGGAAGAAGACGATCAGAAAGATAGTACCACAAAGTTAGATAAATTATCGAATGAAGACAAATTCATAGCCGAATATTTTCAAATCACTTGTGACATTTGTAAAATTCCACTGAATACATTTTTCGCAATGCTCAAGCATTACAAGTACGAACACAATCAGCGTGGTCATCTTGAGTGCTGCGGTAGAAAGTTTTCGGCTCGTGCTGAATTAATCGATCATATAAATATCCACAAGAATCCCGAATATTTTAAATGCAAATACTGTAACAAAACGTTTTCTAAACGTGCATGCCTAAGGATACATCTAAAAAATATTCATGATGAAAACAGGGTGGATTGTGGCATTTGTGGCAAAAGTTTAGTAAATGAATCAAGTTTAAAAAGGCACATGCTTACACATAATACTGAAGAGAAAATGGTATCTTGCAAACATTGCGGCAAATCTTTCTTATCTGAATGCTCCTTAGAGAATCACAAACAATCTCACTACAACAAGCTTAAGATTTGCGATTTATGTGGTAAATCTATATCAAAGGCCCATGCTTTCAGACGTCATATGTTAGAGCACGAAGGAAAAGCTCCACCGAAAGTAAGCTGTAAAATGTGCGATCGGCAGTTTTCAGATAAAGGTGGCTTACAGCGCCACGTGCGAGTGCATCATCCACCGGAAGGAGCTATAACTGAATTTAAATGTGCTAAGTGCCCAAAAGTGTTTGCAGCTATTCACAGTCTTAAGGCTCATATGAGAAAAGTACACGATAATGCATATGTAAGAAAGTGTACATTGTGTGATAGATCATTTAAAGAACCCGGTCGCCTAAGGAATCACAAACGATCTCACTACAAAATGATTAGGATTTGCGATTTATGTGGTAAATCTATATCAAAGGCCCAAGATTTCAGACGTCATATGTTAGAGCACGCAGGAAAAGCTCCACCGAAGGTAAGCTGTAAAATGTGCGATCGCCAGTTTTCATATAATAGATGTTTGTATCGACACGTGCGAGCGCATCATCCACCGGAAGGAGCTACAACTGAATTTAAATGTGATAAATGCCCAAAAGTGTTTGCAGCTATTTATAGTCTTAAGGCTCATATGAGAAAAGTACACGATAATGCATATGTAAGAAAGTGTACATTGTGCGATAAAACATTTAAAGATCCCGTCCGCCTAAGGGAGCATATGTCAAGGCATAAAGGTGAACCCTTATACAATTGCGGCTTTTGTTCTAGAAAATTTTATTCCAATGGGAACTATTATACACATCGCAAAATATGTTCTGAAAATCGTAAAGAAATAATTGAAGATTTAAATAGTCAATCCTATATATGTCAACCGTGTTGGAAAGAATTATACAACTTCCATAAGTTTTATTCAAAACTTGAAAAAGCCCGTTCAAATTTAAATGATTTATTGAACACTGAAGAAGTTACCAAAGAAGCTATTGAAAAAGGAAACGAAAAAGAAGAAGCTGAGAAAATTTCTAATATTGCAAAAGAATCACAACCTGAACCTGAAATTTTATTTTTTAGAGATGAATATCCTACAGATATTTTTGAAACGGAAGATGAAGAGGAAGTAAGTTGTCTTAACACTAATAGCCAGAGTAATTGCTCTGAAAAGAAAAGTTTACATGACAAAAAAATTTTTAAAAATGGTTCGGGGCAAATATCCAACAAAGAACAAAGTAATACTGAAGTAAACGAACTAAAATCCAATGAAAATTTAGACGAAATTGGTTCAAAATTTGAAGAAGAAAGAATAGTAAACGACAAGTCCCATGAAAATGGAGCTGAAATTGATTCAGAATTAAAAATAATTGAGAATAATGCTGAAGACAATAAAATGAAAAATGGGGAAGAATCTGTTTGCCTTAACAGACGAACTGAGCGTAAATGCTCTAGAAGAAAAAAAAGTACAAATGATAACAAAATTATTGCAAGAAAAAGTTTGAGGCAAAGATCCAGCAAAGACAAAAGCAAAATTGAAATTGCAATAAAAAGTGTAAAATCCGATAAAAGTCCAGATAAAATTGACAAAATGTTAGAAGTTGAAAGAATAGAAAATAACGACAAAGAAAACAGTATGCAATTCGACGAAAATATAGATGGACTTAAAAACAAATTAGAATTAAAAACAACAGAAAATGATGCTAAAGAAAACAAAATGGAACATGACGATCAGAATGATGATAGTTCCAGAAACCACGATGTAACTTCCTTCGATGCGGCTGATTCAGGCAAGTTACATAAATTATCGGTTAAAGACAAATTCATAGCCGAAAATGTTCAACTCATTTGTGACATTTGTAAAATCCCACAGGATACATTTTCCGCAGTAATTAAACATTTCAAAGAGATACACAACCAGCGTGGATATGTTAAGTGCTGCCGTAATAAGTTTGCGAATCGTTTTGAATTAACGGATCATATCAACTTCCACAAAAATCCTGAAGATTTTAAATGCAAACACTGTGGCAAAGTATTCCATAAAATCGCAGCGCTAAAGACTCATATACAGGAAATTCATGAAGCAGAGGTTGCTGAATGTGACATTTGTGGCAAAAGTTATACAAATGAAAAGGGTCTAAAAAAACACAAAAAACACCACGAAACTGAAGATATATCTTGTGAAAAATGTGGTAAATCCTATTCATCTAAATACTCCCTGCACAATCACATGCGACTTGTTCACGTTAAAAATATAATTTGCCATTTATGTGGCCGATCTGTTATATTGCCCGAATTAAAACGTCATATGGCACGGCATGAAGGAAAAAAGCCACCGAGGTTAAGCTGTAAAATTTGCGATCGCCAGTTTGCACATAAGAGTGGTTTAAATCGGCACGTGCAAGACAAACATCCAAAGAAAGAAGTTAAAAGTGAATTTAAATGTGCCGAGTGCCCAAAAATGTTTCCAGCTGCTTCTAGTCTTAAGACGCATATAAGACAAGTGCACGAATCAACATTAGAGCATATGTCAAGGCATAACGGTGAACCCTTATACAGTTGCGGAGTTTGTTCTAGACCATTTTATTCCAATTCCAACTTGCACGTGCATCGCAAAACATGTTCTGGAAAGCGAAAAGGAGAACGTGTAACAAAAAGAACGGAAAATTAA
- Protein Sequence
- MNCLLCLEVTESYKDLIVFNSSEWQELNMQYIIEKYLWKLEVLNSQSYICQACWQELYNFHKFYLKLEKAHSNFNDLLNTEEVTKEEVEIGNGEEAEKIFNITAKVSQAEPEILFFSEEYPTDIFEMEDEEEVNHLKINTKRNSYEKKSSQNKNIVKNSSRKISSNDQINELKSNENPDEIHSKLKTERIENDKCNENGAEIDTELITIENDAEDNKMEDEKEFTCLKSSTKGKCSREKCTNDNKIIARKSLRQRSSKDKSKTEIEMKKLKSHKSPDEIDKKLEAESIEKNAIDELKTKLELKTTENDAKQDKMEEDDQKDSTTKLDKLSNEDKFIAEYFQITCDICKIPLNTFFAMLKHYKYEHNQRGHLECCGRKFSARAELIDHINIHKNPEYFKCKYCNKTFSKRACLRIHLKNIHDENRVDCGICGKSLVNESSLKRHMLTHNTEEKMVSCKHCGKSFLSECSLENHKQSHYNKLKICDLCGKSISKAHAFRRHMLEHEGKAPPKVSCKMCDRQFSDKGGLQRHVRVHHPPEGAITEFKCAKCPKVFAAIHSLKAHMRKVHDNAYVRKCTLCDRSFKEPGRLRNHKRSHYKMIRICDLCGKSISKAQDFRRHMLEHAGKAPPKVSCKMCDRQFSYNRCLYRHVRAHHPPEGATTEFKCDKCPKVFAAIYSLKAHMRKVHDNAYVRKCTLCDKTFKDPVRLREHMSRHKGEPLYNCGFCSRKFYSNGNYYTHRKICSENRKEIIEDLNSQSYICQPCWKELYNFHKFYSKLEKARSNLNDLLNTEEVTKEAIEKGNEKEEAEKISNIAKESQPEPEILFFRDEYPTDIFETEDEEEVSCLNTNSQSNCSEKKSLHDKKIFKNGSGQISNKEQSNTEVNELKSNENLDEIGSKFEEERIVNDKSHENGAEIDSELKIIENNAEDNKMKNGEESVCLNRRTERKCSRRKKSTNDNKIIARKSLRQRSSKDKSKIEIAIKSVKSDKSPDKIDKMLEVERIENNDKENSMQFDENIDGLKNKLELKTTENDAKENKMEHDDQNDDSSRNHDVTSFDAADSGKLHKLSVKDKFIAENVQLICDICKIPQDTFSAVIKHFKEIHNQRGYVKCCRNKFANRFELTDHINFHKNPEDFKCKHCGKVFHKIAALKTHIQEIHEAEVAECDICGKSYTNEKGLKKHKKHHETEDISCEKCGKSYSSKYSLHNHMRLVHVKNIICHLCGRSVILPELKRHMARHEGKKPPRLSCKICDRQFAHKSGLNRHVQDKHPKKEVKSEFKCAECPKMFPAASSLKTHIRQVHESTLEHMSRHNGEPLYSCGVCSRPFYSNSNLHVHRKTCSGKRKGERVTKRTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -