Basic Information

Gene Symbol
ct
Assembly
GCA_944452685.1
Location
CALYBZ010000329.1:249632-277139[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.4e-26 1.2e-22 80.6 0.0 3 72 1122 1192 1120 1197 0.94
2 3 1.3e-31 1.1e-27 96.7 0.0 3 77 1550 1625 1548 1627 0.96
3 3 1.6e-30 1.4e-26 93.2 0.0 3 76 1803 1877 1801 1880 0.96

Sequence Information

Coding Sequence
ATGGAATGGGCTTTCGCATCAGATCAGGATCTTAAAGATGCTTGTGAGGAATATAAATTATCGGACGATGGCGACAGAAGCACGTTGATAAGACGCATTAAACTTTTTGAGAAAAATCGAGCGGAAAAACGAAAGTTCGAAGAAGAAAGAATTCAGACTGAAGATGTAAGAAGGAAGAAAGATGAAGAAAGATTAAGAGCCGAATATGAAAAAAGAATGGAAGGAGAACACAATGAACAAGCAATAGGACAGTTCACTGAATCAGTAAATCAAGACGAAAGAACAAAAGGAGATGAATCACAAACGTTTGACGAAAGAGTAAGACAAGAAGCTGAAAGAAGAAAAAATGAAGAAGATGAAAGGCGGTTCGAGGAAAGGGTCATGACAGAACTACAACGGCTACGGGATATGGAACTACGATCTATAAGTGACCCAGTAGCATCACATCAACCAGGCAGAAGTCTTGAAGACACTTTTGATCAAAATGCGAGGGGAAGGCAGTCGGAAGTTACATTTCGAGATGTTGATGAGCTAATGCAAAAGTTTTCCGGTGAAGGTGGTCGGAGCATAGACGAATGGCTTGATGACTTTGAACAAAACGCTTGTCTACTAAAATGGACAAATTTTCAAAAACGAATCTATGCTAAAAGGCTGCTAACAGGTACTGCAAAACTTTTCATGGAGCACGAATGTAAAGCAAAATCATATGGTACGCTCGCTTCTGGACTTAAAGAAGAGTTCAAATTTATGGTTAATAGTGCTACTGTACATCGAATGTTACGCGAGCGCAAAAAGATGGCATATGAATCATATCGTCAATATATATATACGATGATTGAAATTGCTTCACAAGCGAAAATCGATACAAGTTCTGTTGTCAGTTATATTGTCGATGGATTAAAAGGCTCGCCATACAACAAGGCTTTTTTATATGAATCAAGATCAATTGCTAAATTGAAGGAAAAATTGCAGACGTATGACCAAATTCAACTTAAAATTGAATCAAAGCCAGAGAAGGATAAATCTGATAAATACTGCTTCAACTATGGCGAGAAATCTCACGTATCAGACATGTGTCCAAATAAAAGTAAAGGACCTAAATGTTTCAAATGCAACGACTTCGGTCATAAGTCCAATAGCTGTAGTAAATCTGAGAGGCGTATGCAAAAATCCTATATTAACGTCGTAGAATGCAGAACATCATATAAAGTTGTCAACACAAACGGTGTTGAAATGGAAGCACTAATAGATAGCGGAATTAACGCCGTTAAGGAAATCATTAATGAAAACGATGATTATGAATACCAGCACCAGGAACATAATTGTTTAGATGTATTAAAGGAAGATAATGACGATGATTTTGATGATGAAGATGATTATTACGATGAAGATGACTACATTGAAAATCATTATTATTATGAAGAAGATGACTACAATGGAGATGATTCTCATGATGAAAATGATGACTACGCTGAAGATAATTATTATGATAAAAATTATGACAAAATAAAGGATATTAAAGCCTTATTTGAGGAAGTAAAGCGTTTAAGAAACGTAGAACAAACCCATTTGTTACAAATACACCGTTTAGAAGAACATTTGGAAGCCAAACGCCAGCACATTGTACATTTGGAATCTAAGCTAGATAAACAGCAAATTAATGAAgctttacaagaatcccagcagcagcagcagcagcagcaacaacaagaacagcagcagcaGGAAGAGGATCTTATCAAGGACTGTGAAATGTTAGAGCTTAACGAAACAGCTAACCAAGAGGACGATGATGAAAACGAGGTTGAAGAAATTGTTAAAGATAGAAACTGTGATTTAATGCCACGTCTAAGTGAAAAACAACAACAGAACGAAGAAGAAGAAGAAGAAGATGATGATGATGAGGGTATGAACCAAAATGAAAATAATCAAAATTCCGCTGACTTGGAAGGGTGTACAAATACTAAAGATTCTCTGAAGGACTTACAAATTAAAAAGGAAACTCAATCACCTTTATCATTAGACTCAATTAGCCAACAAAATGCCATTGCAGCAGCTGCTGCGGCAGCCGCTGCCTGCAATAACGACCCCAATAAATTCCAAGAATTATTAATGGAACGCACCAAAGCTTTAGTAGCCGCTGAAGCTTTAAAGAATACCGAAGAAACTAATGTAGTTAACGATGAGCCACAATGTTTAGATACAAATGAAAATGTTGCTAGCTCAGATAACAGCGAGAAACGAGATGTTGAGGAAGATGTTGAAACCTCGAAAGTGCCAAAAATCGAAATACTAGATGATGATGAAGAAGATGATCATTCAAAATCAAATTTCCTTAGCAACGAAAATGCTACAGCCAAAACGGATTTGTGCTCCAGCATTGACTTGGAAGTTTTGGATGCAACGGCACCAACAGCAGAAAAGCCTTTAGAAGAGGATGAAGATTCTGCAACATTTAAACAAAGTGTTGAACGTTTTGGTACTTTGTTGGGTGAAGAATTGGTAAATTCCTACTGGCGCAGAGGTTTTGATCACACAAAATCTTTGTATGCgcagcaaacccaacaacagcagcagcaacaacaacaacaacatcatctgcagcaacagcagcaccaacaacgctccttgcagcagcaacaacatcatcagcatttgatgctgcagcaggcaaacgtccatcatcatcatcatcagcaacaacaacaacaacatcaccaacagtcaatacaacatcatcatcaacagcCTACCCAAACGCATTTATCACAGCCACCCTGTGGTCCTTCCACGACCACCTTGCTTAGTCAATTAGTTAATTCTACTTTTTCCACTCCCAACTCTAATACTTCAACTCAATCCTCTTTACGTTCTGCAGATGGTTTTACACACTCGCAGCCTGCATCACATCACCATCACCAGCATCCGCACCATCACCTGCATCATCAAATGCCCGCTCACTTGGCCGAACATCATGATAAGTCGTTACTCAATCATCACGATTCGTCGGCTTCCAGTGCCAGTACACCCAACTTGCAGGAACAGCGCAACAATGAGGACCATCACAGCTTGTCGCTGAATGGTTCCCTCAAGAATTTGGAGGATAATAACAATAGCCTATGTGCTACACCCACCAGTCATCATATGGGACCTGGACATCCCTCACATTTGCCTCATGGCTTCCTACCTGGTCTACCATTCCAATTCCAAGAACGTGGCCATTTTCGTTTTGCTGACGATTTACAATTACCTCCAGGCACTTCTATGGCTGGCCGTTTGGGTGAGTCCTTGATCCCTAAGGGAGACCCCATGGAGGCCAAACTGCAGGAAATGTTGCGATATAATATGGATAAATATGCCAATCAAGCCTTGGATACATTGCACATTTCACGGCGCGTGCGCGAGTTGTTATCGGTGCACAATATAGGCCAGCGTATTTTTGCCAAATATATTTTGGGCTTGTCGCAGGGCACAGTGTCCGAGTTGCTCTCAAAACCCAAGCCCTGGGACAAGTTGACAGAGAAGGGACGTGATAGTTATCGCAAAATGCATGCCTGGTCCTGTGATGATAATGCTGTTATGCTACTCAAATCTTTAATACCAAAAAAAGATTCTGGCTTACCTCCTTATGGCAGTGGTGGCCGTGATGATTCAATGTCTGATGAGCGTATCGCTCACATTTTAAATGAAGCTTCGTCATTGATGAAATCATCTGGTCCTTCTTCAGTACATCAACAACATGAACATCAAAGGAGACCCTCTACTATACCAGAAGACTCACGAAGCAATGATGATTCCAAGTCACCTCATCCACCCTGCTCATCGCCGTTCTTCAAAGAGCACCACAGCAAGTCTCAAGGTGAAACAGTTATGCCTGGTCAAGGACATATGCGTTCCGACGATATGAATCCCGAAAAAATGGCCAGATTATATCAAGAGCTTATGGCCAGAGCTCCCCGTGAAACATTTCCAGGATTTTTGTTATCTCCCTTTTTCAGTGGCGGTTTGCCTTCGGCTGCCGGCATGGGTGCAAACGCCTTCCCTGGCTTAGCGGCCGATGAAAATATGCGTTTGGCTTTTGAGCGCGAAATGTCTAAATTACAACAGCAGCATCAGCAGCATGCTGCGCAGCCACCGAACTTTGCCAACTTCTCTAGTCTAATGGCTTTGCAGCAGCAAATGTTAAATGGCGCCCAGGATTTAACTTTGAGTACTGATGAGAAACCCAAGGATAGCAATAAAGTTAATGGCCAACGCAGCTCATTTGAGGGTTCTCAAAGTTCCCACAGCAATCATGGCCAGACAACACCAAACGCCAAAGAGTCCAGCTCGGCAGAAGTGGAAAGACTTTACCCAGGCCTGGTGAAATCAGAACAAGGCTGCAAAACTCCCGCTCCTTTGGTTTCAAGTAATGCCTCAACGACCAATGCCAGCTCGGCTGCCCCCAGTCCTCTCAGCAATTCTATACTCCCGCCTGCCATGACACCCAATGAGGAATTCTCAGCCACCGCCAGCCCTTTACAAAGAATGGCCTCCATAACCAATTCGTTGATAACACAACCCCCTGTACCACCTCATCACAATCCTCCTCAAAGGCCCACGAAAGCCGTTTTGCCACCCATTACTCAGCAACAGTTCGATATGTTCAACAATCTCAACACGGAAGACATTGTGCGACGTGTCAAGGAAGCTTTGTCGCAATATTCGATATCGCAGCGTTTGTTTGGTGAATCTGTATTGGGTTTGTCTCAGGGCTCAGTATCGGATCTTTTAGCCAGGCCCAAGCCCTGGCACATGCTGACGCAAAAGGGTCGGGAACCCTTCATACGTATGAAAATGTTTTTGGAAGATGAAAACGCAGTACACAAACTGGTTGCTTCTCAGTATAAAATTGCACCCGAAAAGCTAATGAGAACCGGCAACTACAGCGGGTCGCCACAAATTCCTCAGGGTCTGGCCAATAAAATGCAGGCCTCTTTACCCATGCAAAAAATGATGAGCGAACTGAAATTGCAAGAACCAGCTCATATCATGCAACAAATGCAAGCTGCTGCCGTTATGTCAGCAGCTATGCAACAGCATCAGCAACAGCAGGCTGCAGCAGTCCAACAAAGTCAGCAACAGGCCGCTCAAGCGGCTGTACAGGCTGCCCAAGCTGCAGCCGCTGCGCAAGCGGCCCAACATCACCAAAGCATGCTCTTGACTTCACCAGGTCTGCCGCCTCAACACACTATCGCATTGCCCGCAGCTAATTCTCAACCAACATCTGGTAATAGCACTCCAGCTGGTCCTACACCGGATAAGAAGCCCATGATGATGCCCATACATTCTCCCCACCAAGGCAATGCCATGCGCAATATGCACCAGCATATGTCACCCACCGTATACGAAATGGCTGCTCTAACACAAGATTTGGACACTCAGGTTATCACTACCAAAATCAAAGAGGCTCTGTTGACCAACAATATAGGCCAGAAAATATTCGGCGAAGCTGTTTTGGGTTTGTCTCAAGGTTCAGTGTCTGAATTGCTTAGCAAGCCTAAACCCTGGCATATGTTATCGATCAAAGGCCGAGAGCCTTTTATACGCATGCAACTGTGGCTTTCGGATGCCAACAACGTTGAGCGCTTGCAAGCTCTGAAGAATGAACGCCGGGAAGCATCGAAACGCCGACGATCTACGGGACCCAATCAGCAGGATAACAGCTCTGATACTTCCAGTAATGATACGAATGACTTTTACACCAGCAGCCCTGGACCCGGCTCAGTGGGCAGTTCCGGAGCTCCTCCCAATAAGAAACAACGGGTCCTGTTCTCCGAAGAACAAAAGGAAGCCTTAAGACTAGCATTTGCCTTAGATCCTTATCCCAATGTAGGAACCATTGAATTTTTGGCGAATGAATTGGGCTTGGCAACGCGCACCATCACCAATTGGTTCCACAATCATCGTATGCGTTTAAAACAGCAAGTGCCTCATGGTCCACCCGGTCAAGAAACCAATATACCCACTAGAGAAAACACGAATTCCACACCCTTTGATCCAGTTCAGTTCCGTATTTTACTACAGCAAAGACTACTGGAACTGCATAAGGAGCGCATGGGTTTGGGTGGCAATACGCCCTTGCCCTATCCGCCGTACTTCGCTGCAGCCGCTTTGTTGGGACGTTCTTTAGCTGGCATGCCAGGCACCAATCCCCAAACCGCCTTGCCCACCAATGAGGCTGAGTTAAGAGCCCTCAATCAAGCCTTCAGAGAACAAATGTCTGGCTTGGACCTGTCCATGAGCTCTTTAAAGCGAGAACGTACCGACGACTTTGAAGATGACATGGAAAGTCACATGTCGGAAAATGAAAACGATGATTTGGATGATGAGGATAAAACTAGCGAGTACAGAAGCTCGGCTTTGTCTAGCATGAATGCCCAACAGTTTCTAAACAACATGCGCTCCAACCGAAGAAAACCCGCTGCACCACAATGGGTTAATCCGGCTGTGCCAAATGCCAATGAAGCTGAACGTATTATCAATGGGGTGTGTGTGATGCAGGGCGAAGGAGAAGCTCAGCCGCAAACTGCCAACGAGGATCTAAACAAATCTCTCGACCACGAAGACAACGACGTAATGGAAACGCCACATCAATCAGTAATGGAACCCGAGGTTTTGATCAAACAAGAAAAAGAAGACTGTGAAAGTGATAGTGAAAAAACAAACGCCGAGGACAGCGCTTCAATGACTGAGGAAAGAATTAAGTTGGTACAGGAAGAAAAGCTCAGAATGGTGCGTGTCAATCGTTTGAGTAATGAAGACGAAACAATAGCTACAGTTAATAACGCATCAGCAACTGCGTGGAATTTTTAA
Protein Sequence
MEWAFASDQDLKDACEEYKLSDDGDRSTLIRRIKLFEKNRAEKRKFEEERIQTEDVRRKKDEERLRAEYEKRMEGEHNEQAIGQFTESVNQDERTKGDESQTFDERVRQEAERRKNEEDERRFEERVMTELQRLRDMELRSISDPVASHQPGRSLEDTFDQNARGRQSEVTFRDVDELMQKFSGEGGRSIDEWLDDFEQNACLLKWTNFQKRIYAKRLLTGTAKLFMEHECKAKSYGTLASGLKEEFKFMVNSATVHRMLRERKKMAYESYRQYIYTMIEIASQAKIDTSSVVSYIVDGLKGSPYNKAFLYESRSIAKLKEKLQTYDQIQLKIESKPEKDKSDKYCFNYGEKSHVSDMCPNKSKGPKCFKCNDFGHKSNSCSKSERRMQKSYINVVECRTSYKVVNTNGVEMEALIDSGINAVKEIINENDDYEYQHQEHNCLDVLKEDNDDDFDDEDDYYDEDDYIENHYYYEEDDYNGDDSHDENDDYAEDNYYDKNYDKIKDIKALFEEVKRLRNVEQTHLLQIHRLEEHLEAKRQHIVHLESKLDKQQINEALQESQQQQQQQQQQEQQQQEEDLIKDCEMLELNETANQEDDDENEVEEIVKDRNCDLMPRLSEKQQQNEEEEEEDDDDEGMNQNENNQNSADLEGCTNTKDSLKDLQIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNTEETNVVNDEPQCLDTNENVASSDNSEKRDVEEDVETSKVPKIEILDDDEEDDHSKSNFLSNENATAKTDLCSSIDLEVLDATAPTAEKPLEEDEDSATFKQSVERFGTLLGEELVNSYWRRGFDHTKSLYAQQTQQQQQQQQQQHHLQQQQHQQRSLQQQQHHQHLMLQQANVHHHHHQQQQQQHHQQSIQHHHQQPTQTHLSQPPCGPSTTTLLSQLVNSTFSTPNSNTSTQSSLRSADGFTHSQPASHHHHQHPHHHLHHQMPAHLAEHHDKSLLNHHDSSASSASTPNLQEQRNNEDHHSLSLNGSLKNLEDNNNSLCATPTSHHMGPGHPSHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGSGGRDDSMSDERIAHILNEASSLMKSSGPSSVHQQHEHQRRPSTIPEDSRSNDDSKSPHPPCSSPFFKEHHSKSQGETVMPGQGHMRSDDMNPEKMARLYQELMARAPRETFPGFLLSPFFSGGLPSAAGMGANAFPGLAADENMRLAFEREMSKLQQQHQQHAAQPPNFANFSSLMALQQQMLNGAQDLTLSTDEKPKDSNKVNGQRSSFEGSQSSHSNHGQTTPNAKESSSAEVERLYPGLVKSEQGCKTPAPLVSSNASTTNASSAAPSPLSNSILPPAMTPNEEFSATASPLQRMASITNSLITQPPVPPHHNPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLANKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQAAAVQQSQQQAAQAAVQAAQAAAAAQAAQHHQSMLLTSPGLPPQHTIALPAANSQPTSGNSTPAGPTPDKKPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQALKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGGNTPLPYPPYFAAAALLGRSLAGMPGTNPQTALPTNEAELRALNQAFREQMSGLDLSMSSLKRERTDDFEDDMESHMSENENDDLDDEDKTSEYRSSALSSMNAQQFLNNMRSNRRKPAAPQWVNPAVPNANEAERIINGVCVMQGEGEAQPQTANEDLNKSLDHEDNDVMETPHQSVMEPEVLIKQEKEDCESDSEKTNAEDSASMTEERIKLVQEEKLRMVRVNRLSNEDETIATVNNASATAWNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01399346;
90% Identity
iTF_01399346;
80% Identity
iTF_01399346;