Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465277.1:8513092-8517156[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.3 6.9e+02 2.6 0.8 1 10 25 34 25 48 0.75

2 12 1.9 2.5e+02 4.0 6.7 1 23 227 250 227 250 0.96

3 12 1.8e-05 0.0023 19.8 2.0 1 23 260 282 260 282 0.99

4 12 0.1 13 8.0 0.4 2 23 289 310 288 310 0.97

5 12 0.0027 0.34 13.0 0.3 1 23 316 338 316 338 0.96

6 12 0.052 6.7 8.9 1.6 1 23 344 366 344 366 0.96

7 12 0.31 39 6.5 1.5 1 17 369 385 369 385 0.93

8 12 0.0022 0.28 13.2 3.8 1 23 508 531 508 531 0.97

9 12 0.005 0.65 12.1 2.0 2 23 541 562 540 562 0.96

10 12 0.00018 0.023 16.7 0.2 1 23 595 617 595 617 0.98

11 12 0.00057 0.073 15.1 7.8 1 23 623 645 623 645 0.99

12 12 5.6 7.2e+02 2.5 0.4 1 10 648 657 648 660 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.3	6.9e+02	2.6	0.8	1	10	25	34	25	48	0.75
2	12	1.9	2.5e+02	4.0	6.7	1	23	227	250	227	250	0.96
3	12	1.8e-05	0.0023	19.8	2.0	1	23	260	282	260	282	0.99
4	12	0.1	13	8.0	0.4	2	23	289	310	288	310	0.97
5	12	0.0027	0.34	13.0	0.3	1	23	316	338	316	338	0.96
6	12	0.052	6.7	8.9	1.6	1	23	344	366	344	366	0.96
7	12	0.31	39	6.5	1.5	1	17	369	385	369	385	0.93
8	12	0.0022	0.28	13.2	3.8	1	23	508	531	508	531	0.97
9	12	0.005	0.65	12.1	2.0	2	23	541	562	540	562	0.96
10	12	0.00018	0.023	16.7	0.2	1	23	595	617	595	617	0.98
11	12	0.00057	0.073	15.1	7.8	1	23	623	645	623	645	0.99
12	12	5.6	7.2e+02	2.5	0.4	1	10	648	657	648	660	0.91

Sequence Information

Coding Sequence: ATGTCACTGTCTACGGTTGGTGTTTCCAAATGCGGTGAAGTATTTGTTACAAATAACGCCGACAAGTGGACTTTTATTTGCTCTTATTGTCAGAAAACCATCGATGATATTGGAGTTTTTGTATGCCATATTAGATTAGATCACTTGGGTAGTGTTGATGATTTCAATGCGTTGGAAAATGATATAGTAAAACCAGAAGTGCAAACAATTTGTTCTAATCCATCTGAATTCGAACCTGTGGAGACCATACTATGCGATAATTTTTGTCCCACTGTGGCTGAAGACGTAAGGAGAAACAATTTCGCAAAAGATGAAGAAACCATTTCTCAATTCTCATTTAACTCGCAAACTTTTGCCTCTAAAGTTTCGAAAGAAAAATATATCGACTCTAGTGATGATTGTactgaagtaaaaaataataatgtttctAATAAGaATGCGTTTGAAGCATATATTTCTTCAGATGATAGCAACGAGGAATTCTTACCAACAGGCAAGGCTTCACAACAGGAAGAATTTATGACTATAGAAGGAAACAATGAACCCATACAATTAGATTTTGAAAGTAATGATGAAATCATTGATATCGATGATGAAGGCGTTGAAGAAATTTTAGATTCAGATGAATCCAATAAAAATAACGAAGATGAAAATACAGAAACAgacaattttttgaaatataagtGTCGATATTGCCTGCGACATTTCGCATCTACACGAGGCTTACACTACCACAAAATTCGAAAGCATGGTGAAGAATACCTCACAAATTTGCATTTcaaatgtaaaatatgtaataaagcATTCCAAACAGATCGTAGCTTAAAACAACATTTATTAACGCATGACGAAAAAAATGCAATGCAATGCCAAGTATGCTCTGCAAATCTATACAATCTGAGAAATTTACTTCAACATGTAATGAAGCATGAAAGCGATAAATGTTTTCCTTGTCAATCTTGCGGCAAAGTATTTTATAGCAATGAGGAGCGTGTGACTCATTGGAAAGCTCATGCCAAGGATAAACCATTTGCTTGCAGTACGTGTTTTCGTCGTTTTAGCAAAGAATATATCCTAGAACGTCATTTAAGCCAGCATGGCAAATATAGTTGCCATTTTTGCTCGAAGTACTTCATAACGACAGTTCATCTACGATTTCCTTATACTTGTGAAGACTGTGCAAAGTTGCCAGATagctCATTTTCAATTGGTTCTCCTTCAATGGAAATGACGGAAGAATATACTACAGTTATGCCAGCtgtaaaaaaagattttcaccCAAGTGAACGAAATACAATTGTACGAGTTCTCTATAGTAGAAATGATGAATACGAAAACATTACGGACGAAACTAATTACGAAACAATTGAAGATGCTACTGAACAAGATACAAATTCTATTTATTCTCTGGATGATGACTATTCAGCGAACGAAGATACAAGCACAAATTTCCAAACTAACGATAACAGAGCCAGCTGCAGTAAACGCATGAGAGAAGAAGGCCAAGAGCAGGATTCGCGTCACACGTGTGAATTTTGTAATATGAGTTTTAAGTTTAGAAGTGAGCTAGACTAccacttgaaaaaaattcataatcaTAAAATGAATGAAATGCCCCTTAAGTGTAGagagtgcaaaaaaaaatttcgcagTGTAGCTGGCTTCAAGATCCACTCCAAATCTCATGatgaaaaaaacaatatacaATGCCCAATTTGTCAAGTAAAACATACACAAAACTATTTTGTTGCTCATGTATTATCACATGAAAGCGCTACTTGCTTTCCTTGCCAGGTATGTGGCAagatatttaataataatgaaGAGCGTGTGGAACACTGGAAAACTCATGCAAATGAAATGCCATTCAAATGTGATTTTTGTTATCGCCGGTTTCGTAAACAACAGTATCTTACTCATCATATGAAATCTCACTTTCAATATCAATGTCAATTCTGTCCCACCCAATTCAATGCAGTTGAGACTCAGAAGCCTCCATATGCTTGTACAACCTGTGAAAATTTGCCTGACTTAAGGAAAAGATTGGAAAATCAAAGGTCTTTTGCAAACAcaatttcaaaagtaaaatCTCGGAAGCTCTAA
Protein Sequence: MSLSTVGVSKCGEVFVTNNADKWTFICSYCQKTIDDIGVFVCHIRLDHLGSVDDFNALENDIVKPEVQTICSNPSEFEPVETILCDNFCPTVAEDVRRNNFAKDEETISQFSFNSQTFASKVSKEKYIDSSDDCTEVKNNNVSNKNAFEAYISSDDSNEEFLPTGKASQQEEFMTIEGNNEPIQLDFESNDEIIDIDDEGVEEILDSDESNKNNEDENTETDNFLKYKCRYCLRHFASTRGLHYHKIRKHGEEYLTNLHFKCKICNKAFQTDRSLKQHLLTHDEKNAMQCQVCSANLYNLRNLLQHVMKHESDKCFPCQSCGKVFYSNEERVTHWKAHAKDKPFACSTCFRRFSKEYILERHLSQHGKYSCHFCSKYFITTVHLRFPYTCEDCAKLPDSSFSIGSPSMEMTEEYTTVMPAVKKDFHPSERNTIVRVLYSRNDEYENITDETNYETIEDATEQDTNSIYSLDDDYSANEDTSTNFQTNDNRASCSKRMREEGQEQDSRHTCEFCNMSFKFRSELDYHLKKIHNHKMNEMPLKCRECKKKFRSVAGFKIHSKSHDEKNNIQCPICQVKHTQNYFVAHVLSHESATCFPCQVCGKIFNNNEERVEHWKTHANEMPFKCDFCYRRFRKQQYLTHHMKSHFQYQCQFCPTQFNAVETQKPPYACTTCENLPDLRKRLENQRSFANTISKVKSRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397974;
90% Identity: -
80% Identity: -