Tgro038709.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:123592050-123595527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 1.4e+02 4.7 0.0 2 23 216 237 215 237 0.95 2 12 0.13 17 7.6 0.3 3 23 282 303 281 303 0.95 3 12 8.1 1e+03 2.0 0.3 2 19 308 324 307 326 0.77 4 12 0.017 2.2 10.4 1.6 1 21 351 371 351 372 0.94 5 12 0.035 4.5 9.4 2.9 2 23 404 424 403 424 0.96 6 12 0.0082 1 11.4 6.6 1 23 440 463 440 463 0.95 7 12 0.00034 0.044 15.8 0.8 1 23 471 494 471 494 0.96 8 12 0.00029 0.038 16.0 0.4 3 23 501 521 500 521 0.97 9 12 1.7e-06 0.00022 23.0 0.8 2 23 527 548 526 548 0.97 10 12 0.0019 0.24 13.5 2.2 1 23 554 576 554 576 0.98 11 12 0.002 0.26 13.4 3.0 1 23 581 603 581 603 0.95 12 12 0.19 24 7.1 5.5 1 23 608 632 608 633 0.96
Sequence Information
- Coding Sequence
- ATGAAGCAACGTTGTCGCTGTTGTTTAACAACAAATTCGAATTCTTTTCACGATATTTTCGAACAACATAAGTCTGGAACCAACTAcgcagaaaatataaaatttttagctgAAGTAGAAATAGACCAAAACGATGGTTTATCCCAACGAATATGCTTTGATTGTTATGATGAATTACAGCGTATTTATGagttctgcttaaaaataagagAATCTGATAAAAAGTTGAGAAAAGAATTGAAagtcacaaaaattaaaagtgaagaTGAGGACGAAATGGAAAATGTACAAATGCTCGAGAACGAGTACTTCGCTCCCGTGGACGATAACGGCATGCAAGAATGTGTCATGGAAGAAGTACTGGAGGAAGAAAATGTTCTTATAGTAGAGgaaattcaTGATGTGGAGGAAATTAATATTGTAGAAGAAATATCAGATTGTGTTAAAGATAAAGAACATAAAGTTTACAATCTAAGAGATAATTTGTTGAAGGATTTGGCTTTGGTGGCATCTACTCAAGAAAATGTGTACATCGAAAAGCAAACTATTAGTAACGATTTCTATTTTCCCGAAGATGAGAATGATGAAGACTATTTAATAACATTTGATCCAAATGAAGCTAACAATTTCGCGCAACAAAAATGGAAGTGTGGTGACTGTAAAGTTGTATTGCGCGGTGATGTGTCATATGAGGGCCATATGAATATACATAGAAAAATGTGGCCGCATGCATGTCAACAATGTAAAACGAAGTATAGATGCCGAACTGCACTTAAACGACATAAAGAACTTAAACATTCTTTATCTATTCAAAATGAAGAGACcactaaaaaacaaattttatgctTCATTTGTCAGAAAAACTTTTATTCTGAAATTACATTCTATCTACATCAAGCTATTATCCATTATCAAGGTGATAAGTGCCCGTTTAAATGTAACTATccatatgaaaataatttaaagcaGCATTTAGAATGTACACATGAACAGGAAATGATATGTGCTGCAGAAATATTTTGTTCCAACGATATAAGTCCATCAACCACTCACCAATGTTTTAGATGTTCCGAAATATTCAACACATCAGACCAGCTCCACGATCACGTTAAATTATGCCAAGCAATCGATGAAGAGAGCTTACAAGATGAAAATACTAAACATGAAAATATAGAAATAGTGAAATTAGATGAATCTGATATTTCTGTACAATGCAACGTTTGCCACAAGAAATTACTAAAACGAAACTTGAATAAGCATATGGAACTGCATAAACGTAAAGAAGGAGAAAGCAGAGTGTTGGATCATAACAAATCTCACTCGTGTTCTTATTGTTCCcgtgaatttaaaaattccaaGTCGCTGCATCAACACGAAAAGAACCAACATGGCGGGAGTTCAGATGTTTTGTACGTCTGTGCAGATTGTGAGCGTCACTACGCTACCCAATATTTATTAGAATCACATCGTAAGCAAGCGCACAAAGAACGTGATAATATCTGCAAGATATGTGGTAATGCTTTCAAGTTGAGAAATCAACTTGTGAATCATATGAAGCTGCATTTGGAAAAGAATATACCATGTCCACACTGTGATAAGAAATATGCCAGACAATTCGATTTAAACGTTCATCTCAGATCGCATACAGGCGAACTGCCATACGCCTGTCATTTGTGTGATAAAAGATTTGCCATTAAAGTGCGTCTAACTTACCATCTGCAAAAACATTATGGTGTGAAGCACTACTGTAAGGAATGTGGTGCTGAATTTAATTCCAAACAGAAGCTAAAAGCTCATTCATATAAACATACGGGTATGCCCTATCGTTGTCAGATGTGTGATTATCATGGATTTGCCACCCGCAATACGTTTAAACGGCATTTAAATCGTGTCCATCATACCTCTATACCTGAAGAAGCCCTTAACGAGATGTTTCGAAAAAACACTGGAAAAAGTGTTAATATAAAACAGATTAATgagcaaaatattttactgactGCCAGCGAAGATGACAATATTGATGAAGTAGAAGTATTAGGAAAATAA
- Protein Sequence
- MKQRCRCCLTTNSNSFHDIFEQHKSGTNYAENIKFLAEVEIDQNDGLSQRICFDCYDELQRIYEFCLKIRESDKKLRKELKVTKIKSEDEDEMENVQMLENEYFAPVDDNGMQECVMEEVLEEENVLIVEEIHDVEEINIVEEISDCVKDKEHKVYNLRDNLLKDLALVASTQENVYIEKQTISNDFYFPEDENDEDYLITFDPNEANNFAQQKWKCGDCKVVLRGDVSYEGHMNIHRKMWPHACQQCKTKYRCRTALKRHKELKHSLSIQNEETTKKQILCFICQKNFYSEITFYLHQAIIHYQGDKCPFKCNYPYENNLKQHLECTHEQEMICAAEIFCSNDISPSTTHQCFRCSEIFNTSDQLHDHVKLCQAIDEESLQDENTKHENIEIVKLDESDISVQCNVCHKKLLKRNLNKHMELHKRKEGESRVLDHNKSHSCSYCSREFKNSKSLHQHEKNQHGGSSDVLYVCADCERHYATQYLLESHRKQAHKERDNICKICGNAFKLRNQLVNHMKLHLEKNIPCPHCDKKYARQFDLNVHLRSHTGELPYACHLCDKRFAIKVRLTYHLQKHYGVKHYCKECGAEFNSKQKLKAHSYKHTGMPYRCQMCDYHGFATRNTFKRHLNRVHHTSIPEEALNEMFRKNTGKSVNIKQINEQNILLTASEDDNIDEVEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397888;
- 90% Identity
- iTF_01397888;
- 80% Identity
- -