Tgro039536.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:149062146-149065540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.24 13.5 2.4 1 23 99 122 99 122 0.96 2 13 0.23 29 6.9 2.2 2 23 130 151 129 151 0.97 3 13 0.0062 0.8 11.8 0.3 2 20 211 229 210 232 0.94 4 13 0.0037 0.48 12.5 2.3 1 23 305 328 305 328 0.94 5 13 0.0071 0.91 11.6 0.4 1 22 335 356 335 356 0.95 6 13 7.2e-05 0.0093 17.9 0.7 3 23 430 450 428 450 0.96 7 13 0.0016 0.2 13.7 0.1 2 20 477 495 476 497 0.94 8 13 0.016 2.1 10.5 3.5 1 23 537 560 537 560 0.95 9 13 0.013 1.6 10.8 0.9 1 23 597 620 597 620 0.97 10 13 0.0081 1 11.4 3.1 2 23 642 663 641 663 0.96 11 13 0.0011 0.14 14.2 0.2 2 21 706 725 705 726 0.95 12 13 6.1e-05 0.0078 18.1 7.8 1 23 733 755 733 755 0.99 13 13 0.031 4 9.6 3.3 1 23 761 783 761 783 0.98
Sequence Information
- Coding Sequence
- ATGGAAACCTTGAATGAGGATATTGAGCTCTCTTCAGATAATTTGCAATACGAAcaaagatctCCAAATGAAGAAGTAGATCAAGTTCTTGGGGGTGATTTTAACGATTATGATTCCGAAAACAGTTCTACATCTACGGCGGGCGAAAGCGATCATCTGGTTGAAAAAAGAAAGAAGGATGATGAAATGAACAAGAGCGGGTCCTCATCCTCCACTGAAACTGAAAATGACCTAAGCAATAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAGAAGCACCTGCCAACAAATATAATTGTGAATTGTGTTCaaaaggttttttttacaaacatcAAGTGTTTGCACATATGAGAGAGGATCATTTGAACGAAGAAACTCCTTTGAAATGTCTCCATTGCAAGTTGGAATTTATAtcaataaaaatgtatgaacaaCACAAAGAAACTCACTGTCGAAATGATCATAAACTACTGATTTGTTCTAATTGTCCCGGCAAGTTTGTTTGGcccgaaaatattaaaaaacacaattgcttaacgaaaatattacaTATTCAAAAATCTCTAAAAGATGAAATTAGTGAAAGGAATAATGAAGTAATTCGTTCATCGCCAGTAACTATCATAAGATGTGGTCTTTGTGAAATTACCTTTAAAAAATTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACAGGAGTTGACTTTAATGATTGTATTTATGTAAATCAATTTGAAACTTCATCCAGCAATCGCGAATTGTTGGAACGTAacattaaaaatgcatttacgAAAAGTCAAATAAGTCAATTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCTGATAGTGATGAAGATGATGCTGATGGtgaaaaaagttatttgtgtgaactttgctatgaaacgtttaaaaagcgaaaacttctttttaatCATCAAAAGGAACAACACAAGTATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGTTACAACAACATTTAAAGAGGGAATGTTGGAATGAACATCGACGAGCAGCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATGCAgctatgcttaaatataaaaaaatcgaattCTGAAGAATTGTGTGATAGCCAGTCAAAAAAAACAATAGCTTCATCGAACTCAAATTCTAATGCGCCAAGTGCCAATATTCAAATTAGTAATTGTTTCGTATGTCCTAAAACTTTCTCTAATACTGAATATTTAAATGAGCACTTGATGCGTCATCGGTTCACACCATCCACCATAAAAACTATTGCAAGCACAATACATTCTATATGTTGGAAAAATCGCTTCAAGATAATACAATGCAAAAtatgtaatgaaaaattttcaagtattgGCGAACTAAAGGAACATTATTCCGAAAATCTCACAAACTTGTGTGGTACTAGGCAACATTCTCTGGCAAATTACTCGATTACTAATGAAATGGGGTTTGAATTAAATTTAGAGCTGGATTCGGAACCAGAAACTAGATTGCCATATAGATGTTGCATGTGCAATAAAttatttaagcaaaagtttCAAATAATTCAACATCAAATATGGATGCACAATTATGAAATGTTGGAACTCAAATGTGAACGTTGTGTTTTTAGGACTGTATCAGAGAAAGTTTTAGATTATCATAGAATGAGCCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTgtaatttcaaatttatgtggCAAAAGAACCTTGAGGACCATATTTCCATATTTCATACATCAAACGCGTTCGTTAAACCATTAATCTATAACCATTTACAAACCTACAAACCACGATGCATATgcaaaatttgcttaaaattatttcaactaCCGTCACATCTGGCCTCTCATATGAGATATCATTCGGATAAAGATCCAAAAAGACAGCTAACTGGTCTAACAAAGTACAAAAAGTGTCCAATTTGTGGTCTGTACAGAAAAGATATTGCAAGGCATATTAGAAGACATAATAAGTCCCAGACGCCATTAAAGTGCGATCGTTGtgataaagtatttaaaagcgaAATGTATTTAGATATCCATCAGCGCTTACAGGCGTGTGAACTTCGTTTTAAATGCACACTTTGCAAGAAATCCTTTTCACATGAATGCAGATTAAAAGCTCATATGCGCACTCACACTGGTGAGCGTCCATATCAGTGCAATTTTTGTCAAAGAAAATATCTTTATAAGGGCACTTTAAAATCTCATTTACTCAAGCATTCTGGCAAGAAACTTTAA
- Protein Sequence
- METLNEDIELSSDNLQYEQRSPNEEVDQVLGGDFNDYDSENSSTSTAGESDHLVEKRKKDDEMNKSGSSSSTETENDLSNSDTDAEDLEEETEAPANKYNCELCSKGFFYKHQVFAHMREDHLNEETPLKCLHCKLEFISIKMYEQHKETHCRNDHKLLICSNCPGKFVWPENIKKHNCLTKILHIQKSLKDEISERNNEVIRSSPVTIIRCGLCEITFKKLRDLRQHMPLHADGKTGVDFNDCIYVNQFETSSSNRELLERNIKNAFTKSQISQLYQAIDKDGKEMDISDSDSDEDDADGEKSYLCELCYETFKKRKLLFNHQKEQHKYVSMPFTCKECKMQYVSIDLLQQHLKRECWNEHRRAAEQCDCCKERFIWPENMLRHKEMQLCLNIKKSNSEELCDSQSKKTIASSNSNSNAPSANIQISNCFVCPKTFSNTEYLNEHLMRHRFTPSTIKTIASTIHSICWKNRFKIIQCKICNEKFSSIGELKEHYSENLTNLCGTRQHSLANYSITNEMGFELNLELDSEPETRLPYRCCMCNKLFKQKFQIIQHQIWMHNYEMLELKCERCVFRTVSEKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQKNLEDHISIFHTSNAFVKPLIYNHLQTYKPRCICKICLKLFQLPSHLASHMRYHSDKDPKRQLTGLTKYKKCPICGLYRKDIARHIRRHNKSQTPLKCDRCDKVFKSEMYLDIHQRLQACELRFKCTLCKKSFSHECRLKAHMRTHTGERPYQCNFCQRKYLYKGTLKSHLLKHSGKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397952;
- 90% Identity
- -
- 80% Identity
- -