Tgro002743.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina grossa
Gene Symbol
-
Assembly
GCA_949987645.1
Location
OX465274.1:30857011-30863595[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.89 1.1e+02 5.0 3.3 1 23 235 258 235 258 0.96
2 12 6.1 7.8e+02 2.4 3.3 2 23 275 297 274 297 0.95
3 12 0.9 1.2e+02 5.0 4.1 1 23 304 327 304 327 0.96
4 12 0.004 0.52 12.4 0.4 2 23 417 439 417 439 0.96
5 12 4.9e-06 0.00062 21.6 4.0 1 23 446 469 446 469 0.95
6 12 0.0099 1.3 11.2 2.5 1 23 489 511 489 512 0.95
7 12 0.00063 0.081 14.9 0.8 1 23 518 540 518 540 0.96
8 12 6.9e-06 0.00089 21.1 0.4 1 23 546 568 546 568 0.98
9 12 2.7e-07 3.5e-05 25.5 3.4 1 23 574 596 574 596 0.98
10 12 8.8e-05 0.011 17.6 1.5 1 23 602 624 602 624 0.99
11 12 9.3e-05 0.012 17.5 5.3 1 23 630 652 630 652 0.99
12 12 0.054 6.9 8.9 4.7 1 19 658 676 658 679 0.96

Sequence Information

Coding Sequence
atggATGGTAATATTTTACAAATGTGTAGAACATGTCTCAGAAGTAGTGCCAACGCACTTCTTCTAACCAATCACGCAACTGGATGTAATCCTAGAAGAACTTATGGTCAACTACTTAAGGAATATGCTAACTTGGAGtgTACTGTTGATTATGAGCGTTTTATGCCTCAATTTTTATGTCAGTTATGTTGCCGTGAGTTGAGAAATACATATGCGTTTATTAAACAAGCCCAATATTGCAATACCAAACTCATAAATGTGATTTCCAATCAACTGGACTGTTTACAAGAGAATGCAATTGATTTGCCtgaaattgaaagcgatttGGAAAAACATCTGGAAATAAAAGTGGAAGAAGAAAATATTGGTGATTCCCCAACCAAAAGTCAAGAAAATAGTGAACAATATGAATACAGCTTCGAAAATTTTAACGAAGAAGAACTTGATAACATTGAGACAATAGACCACAACGAAGATGTCAAAGAAATTGAAATTCTTGATGATGAACAAAATGATTGGAATGATGATTTACCAATGGAATGTTCAACATCTGATtatgataaaattattgataactCCCAAGTTACCACTGACGACCCACAAACAGATTTTGACGATCTAATTGAGTACGTGCATACTCAATGTGATATTGAAACCCTAAGTGAAACCCTTGCCAAGCCTGAACCCGAGAAAAAGCAAGTTTTTAGTTGCCAGTTCTGTTCTGCTGAATATAATAGTAAATATACTTATCTATATCACCTCAAGTATAAACATAATAttaacgaaacaaaaacaaaacaacggAAGAAGGCCAAAACTATAAAATGTTGTTCATGTAATTATATAGCTAGAAGCTATTCGGCTTTTTATAAACACAAACTTACCAAGCATGGCGCTGAAAAGAAAGAGTataaatgcaaattttgttCGCACGTGTATCTACAGAAGTTTGACTTATTAACGCACGTAAAAAATTCACACAAAGAACTGATAAAAACTGACAAAGATGAAATAGAAATTAAGGGAGAAACGCAAAATGACACTACCGCTTTGGAACCGGAGAATTCCATAGATGAAAATGCAGAATTTTCTAGTTATGATAATATTccattaattgaaaaaattgacACATCGAATTCTAACAGTGAaatagaagaagaaaaagaacAGTTCAATGATGAAGAGTTTGTAAGGAATATTTTGGATATTAAGAGCCAGACAGCATTATCGGCCAAATCTTTGGCAAGACGCTGCGATGAATGCGGCAATGTTTATAAAGACTACAAAtctctttacatacataaaagATATGTACACATAAGCGAAGATAAGTACCATGAATGTCCACATTGTggtaaaaaatataaacgaaaaaaCGATCTAAAAATTCATATGGAAAATACTCATAGTTCCAAAGATCcctctgaaattaaaaaacgaaTACGCAAAGCTAAGGAGAAACGTTTCATGTGTTCAGAATGCTCCTACGTGTGTGCAACAATAACCCTCCTTAGAGTACACATTAGTCGACACCATTCAGGCGAAAAACCTTATAAATGTGATTTTTGTCTGAAATCATTTGTGGTGCCATACGAATTGAAAATTCATCGTTATTTACACACCGGTGAACGCCCTTACAAATGTCCAATTTGTTCAAAAGGGTATCGGGACAGTTCTCTTCTGGTTAAACACAAACTTATACACACTGGTGAACGTCCTCACAAGTGTAATGAATGTGATAAAAGTTTTATACGACCGTATAATTTAACGTTGCACAAACGAACGCATCGGAGTGAGAAACCTTACCAATGTTCTCAATGTGTAAAAGCATTTAAACGTGCGGATAAATTGAAATTTCATATGCGCGTACACTCTGAGCTCAGACCCTACAAATGTACTGAGTGTGATAAGGCATTTAAATACCATGACGTATTACAATCTCATATGCATAAACATACCGGAGAAAAACCGTTCTCTTGCAAAACTTGTGGTGAAACGTTTTCATTGCGATCATCTCTGCATTATCATTGCTCAAAATATGATCATCGTAGAAGAGTAGATGGCATTGAAGTACAAGTCAGCAAGTTTGACGATAAAATCTCAGAGCTAGAGAGTAAAGTCCATAGCTTAGAAATTGGTGGCGTGGCAGTACAAGTGAAAAATGTAGACGAGAAATTGCACGAGCTGGAAGCAAAAATCATCAATCTCCAGTGCCAAGGCGGATCAGTGCGATTTGTTCCAGAGGTTTCCATGGCTAACATAAATGGATGGGACAGTGAAGAAAAAGCCATAGAGCTAGTTTTGGCCTTAAAAGGTGCGGCAGCAGATGTACCCGAAACTGTACCAGTAGACTGCAGAAACAGTTTTGATGACATAATGGCGGCACTGCAACGCAAATATGGCGGTGAGCACAAGCGTGACATATACCGCATGGAATTGCGATGTAGAGGACAAAAGCCCAATGAGTCTCTACAAGATTTCGCAATGAAAATCGAGCGGTTGGTGCAGCTTACGTATCCAGGCGAAAACCATCCATTCCTGGATCATGTCAAAGCGCAGGCGTTTGTTAATGGAATCCGCGACCCTGAgatcaaacttgcagtgtgtgcTACGCAAAAGGCAACCTTCGCAGAAATGGTTTCATTTGCACTAACTCAGGAGACTGCTAGACTGATTTTGAAGCCACAGGTGTGCAAGGTACGGAACGTGGAAGTACTTGCCGAAAATGGTAATAGTCTAGTCTCTAGCATTAAGGAGGCCGTGAGACAAGCATTGGCGGAGAAAGAgcaaaaagttaataataagtgcTATAACTGCGGCAAAGTTGGTCATTACCAGCGCAACTGCAAGGCGCCAAGAAAGAGAGCCAGATCTGTTTCGCCATCAAGGAACAGTAAACGGGTGTACCAAAAAACAACACAAGAGTCCCCGTTAAACTAA
Protein Sequence
MDGNILQMCRTCLRSSANALLLTNHATGCNPRRTYGQLLKEYANLECTVDYERFMPQFLCQLCCRELRNTYAFIKQAQYCNTKLINVISNQLDCLQENAIDLPEIESDLEKHLEIKVEEENIGDSPTKSQENSEQYEYSFENFNEEELDNIETIDHNEDVKEIEILDDEQNDWNDDLPMECSTSDYDKIIDNSQVTTDDPQTDFDDLIEYVHTQCDIETLSETLAKPEPEKKQVFSCQFCSAEYNSKYTYLYHLKYKHNINETKTKQRKKAKTIKCCSCNYIARSYSAFYKHKLTKHGAEKKEYKCKFCSHVYLQKFDLLTHVKNSHKELIKTDKDEIEIKGETQNDTTALEPENSIDENAEFSSYDNIPLIEKIDTSNSNSEIEEEKEQFNDEEFVRNILDIKSQTALSAKSLARRCDECGNVYKDYKSLYIHKRYVHISEDKYHECPHCGKKYKRKNDLKIHMENTHSSKDPSEIKKRIRKAKEKRFMCSECSYVCATITLLRVHISRHHSGEKPYKCDFCLKSFVVPYELKIHRYLHTGERPYKCPICSKGYRDSSLLVKHKLIHTGERPHKCNECDKSFIRPYNLTLHKRTHRSEKPYQCSQCVKAFKRADKLKFHMRVHSELRPYKCTECDKAFKYHDVLQSHMHKHTGEKPFSCKTCGETFSLRSSLHYHCSKYDHRRRVDGIEVQVSKFDDKISELESKVHSLEIGGVAVQVKNVDEKLHELEAKIINLQCQGGSVRFVPEVSMANINGWDSEEKAIELVLALKGAAADVPETVPVDCRNSFDDIMAALQRKYGGEHKRDIYRMELRCRGQKPNESLQDFAMKIERLVQLTYPGENHPFLDHVKAQAFVNGIRDPEIKLAVCATQKATFAEMVSFALTQETARLILKPQVCKVRNVEVLAENGNSLVSSIKEAVRQALAEKEQKVNNKCYNCGKVGHYQRNCKAPRKRARSVSPSRNSKRVYQKTTQESPLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-