Tgro039533.2
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:149035710-149045079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.49 62 5.9 2.6 1 23 250 273 250 273 0.94 2 16 0.00052 0.066 15.2 1.1 2 23 304 325 304 325 0.96 3 16 0.0026 0.34 13.0 2.4 1 23 402 425 402 425 0.96 4 16 0.32 42 6.4 2.2 2 23 433 454 432 454 0.97 5 16 0.0089 1.1 11.3 0.3 2 20 514 532 513 535 0.94 6 16 0.0054 0.69 12.0 2.3 1 23 608 631 608 631 0.94 7 16 0.01 1.3 11.1 0.4 1 22 638 659 638 659 0.95 8 16 2.8 3.6e+02 3.4 0.1 2 20 671 689 671 691 0.91 9 16 0.0001 0.013 17.4 0.7 3 23 722 742 720 742 0.96 10 16 0.0038 0.49 12.5 0.3 2 21 769 788 768 789 0.92 11 16 0.00019 0.025 16.6 3.5 1 23 834 857 834 857 0.95 12 16 0.84 1.1e+02 5.1 1.2 1 23 894 917 894 917 0.91 13 16 0.012 1.5 10.9 3.1 2 23 939 960 938 960 0.96 14 16 0.00039 0.05 15.6 0.2 2 21 1003 1022 1002 1023 0.95 15 16 6.2e-05 0.0079 18.1 6.7 1 23 1030 1052 1030 1052 0.99 16 16 0.091 12 8.1 5.7 1 23 1058 1080 1058 1080 0.98
Sequence Information
- Coding Sequence
- ATGATCAAGAGTGTGACGAATGGATGTTTTATTAATGGACTACAGTATAAATGTCGTACTTGTTTTGACCCAGCACCAACAGTATATCCTCTTACTGAGGAGTGCAGCAACTCGAAAACCTGGAAAGATTTATTGAATGATATTGTTCATTTAAAGatAAACGATGACGAGTTACTTCCAAAGACCATTTGTTCGAAGTGTTTGGACAAGCTTATCAGCTACTACgattttatactttatgttcAAAAAGTGAATGAAAAGTATCACCAACTTTTGGCAAGTAGCAAACTGTTTTCAGAAGATGATGGCATTGCCAGCAGCTCTAAGAATATTACGGAATGCTTGGCTGAATCTGCCACTGCCTTGCCTTTGGATCGGAGTGTTTCGGAAATTAAGTTTGAAGATGAGCTAATCATGTCTTACAACATTACCTTAAATAGTGACGATAGAAGAAACGGTTTGGTCAAAGAAGAAGATACCTGTGATCCTTATATGGAAACCTTGAATGAGGATATTGAGCTCTCTTCAGATAATTTGCAATACGAAcaaagatctCCAAATGAAGAAGTAGATCAAGTTCTTGGGGGTGATTTTAACGATTATGATTCCGAAAACAGTTCTACATCTACGGCGGGCGAAAGTGATCATCTGGTTGAAAAAAGAAAGAAGGATGATGAAATGAACAAGAGCGGGTCCTCATCCTCCACTGAAACTGAAAATGACTTACGCAATAGCCCACAAAAATGTTTCCAATGCGGATTTTGTGACAAAAATGCGAGATGTAAGGCATACTTAAGGAGACATCTGGGACGTATGCATCCAGGCGAGTCATTTGaatctaataaaaaacaattagaacATTTGTTTGGAGAACGTCTGTATAGCAAACCTTTTCTATTACCACGAGCGGAATGTAAGCTCTGTGGTTCAACTTTTACGACTAAAAAAACACTTCTTCAGCACTTATATATCCATAGTGAGGCCAGTACTCTccacaacttaaaattaagcaGTGATGTTATTCTGCGTTGGTTTTCAAATATGAGCGATATACAAgacataaaaacaacaatatgcAAAGACATTCGGGAGAAAAATTTGTTCAAatattacacaattttaaatgaCTTTTCCTATGAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAGAAGCACCTGCCAACAAATATAATTGTGAATTGTGTTCaaaaggttttttttacaaacatcAAGTGTTTGCACATATGAGAGAGGATCATTTGAACGAAGAAACTCCTTTGAAATGTCTCCATTGCAAGTTGGAATTTATAtcaataaaaatgtatgaacaaCACAAAGAAACTCACTGTCGAAATGATCATAAACTACTGATTTGTTCTAATTGTCCCGGCAAGTTTGTTTGGcccgaaaatattaaaaaacacaattgcttaacgaaaatattacaTATTCAAAAATCTCTAAAAGATGAAATTAGTGAAAGGAATAATGAAGTAATTCGTTCATCGCCAGTAACTATCATAAGATGTGGTCTTTGTGAAATTACCTTTAAAAAATTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACAGGAGTTGACTTTAATGATTGTATTTATGTAAATCAATTTGAAACTTCATCCAGCAATCGCGAATTGTTGGAACGTAacattaaaaatgcatttacgAAAAGTCAAATAAGTCAATTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCTGATAGTGATGAAGATGATGCTGATGGtgaaaaaagttatttgtgtgaactttgctatgaaacgtttaaaaagcgaaaacttctttttaatCATCAAAAGGAACAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAAATGCAATACGTTAGTATTGACTTGTTACAACAACATTTAAAGAGGGAATGTTGGAATGAACATCGAAGAGTTGCTGAACAATGCGATCGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATACagGAATTGTGTGATAGCCAGTCAAAAAAAACAATAGCTTCATCGAACTCAAATTCTAATGCGCCAAGTGCCAATATTCAAATTAGTAATTGCTTCGTATGTCCTAAAACTTTCTCTAATACTGAATATTTAAATGAGCACTTGATGCGTCATCGGTTCACACCATCCACCATGAAAACTATTGCAAGCACAATACATTCTATATGTTGGAAAAATCGCTTAAAGATAATACAAtgcaaaatatgtaataaagaattttcaagtattATCAAACTAAAGGAACATTATTCTAAAAATCTCACAAACTTGTGTGGTACTAGGCAACATTCTCTGGTAAATTACTCGATTACTAATGAAATGGGGTTTGAATTAAATTTAGAGCTGGATTCGGAACCAGAAACTAAATTTAACAGAAAAAGATTGTCATATAGATGTTGCATGTGCGGTAAATCATTTAAGCAAAAGTTTCAAATAACTCAACATCAAATATGGGAGCACAATTATGAAATGTTGGAACTCAAATGTGAACGTTGTGCTTTTAGGACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGCCAGTGTTTTGATGTTGAGAAAAAATACCAATGCGATCAGTgtaatttcaaatttatgtggCAAAAGAACCGTGAGGACCATATTTCCATATTTCATACATCAAACGCGTTCGTTAAACCATTAATCTATAACCATTTACAAACCTACAAACCACGATGCATATGCAAAATTTGCTTGAAATTATTTCAACTACCGTCACATCTGGCCTCTCATATGAGATATCATTCGGATAAAGATCCAAAAAGACAGCTAACTGGTCTAACAAAGTACAAAAAGTGTCCAATTTGTGGTCTGTACAGAAAAGATATTGCAAGGCATATTAGAAGACATAATAAGTCCCAGACGCCATTAAAGTGCGATCGTTGtgataaagtatttaaaagcgaAATGAATTTAGATATCCATCAGCGCTTACAGGCGTGTGAACTTCGTTTTAAATGCACACTTTGCGAGAAATCCTTTTCACATGAATGCAGATTAAAAGCTCATATGCGCACTCACACTGGTCAGCGTAAATATCAGTgcaatttttgtcaaaaaaaatatcTTCATAAGGGCactttaaaatatcatttactCAAGCATTCTGGCAAGAAACTTTAA
- Protein Sequence
- MIKSVTNGCFINGLQYKCRTCFDPAPTVYPLTEECSNSKTWKDLLNDIVHLKINDDELLPKTICSKCLDKLISYYDFILYVQKVNEKYHQLLASSKLFSEDDGIASSSKNITECLAESATALPLDRSVSEIKFEDELIMSYNITLNSDDRRNGLVKEEDTCDPYMETLNEDIELSSDNLQYEQRSPNEEVDQVLGGDFNDYDSENSSTSTAGESDHLVEKRKKDDEMNKSGSSSSTETENDLRNSPQKCFQCGFCDKNARCKAYLRRHLGRMHPGESFESNKKQLEHLFGERLYSKPFLLPRAECKLCGSTFTTKKTLLQHLYIHSEASTLHNLKLSSDVILRWFSNMSDIQDIKTTICKDIREKNLFKYYTILNDFSYEISISDTDAEDLEEETEAPANKYNCELCSKGFFYKHQVFAHMREDHLNEETPLKCLHCKLEFISIKMYEQHKETHCRNDHKLLICSNCPGKFVWPENIKKHNCLTKILHIQKSLKDEISERNNEVIRSSPVTIIRCGLCEITFKKLRDLRQHMPLHADGKTGVDFNDCIYVNQFETSSSNRELLERNIKNAFTKSQISQLYQAIDKDGKEMDISDSDSDEDDADGEKSYLCELCYETFKKRKLLFNHQKEQHKDVSMPFTCKECKMQYVSIDLLQQHLKRECWNEHRRVAEQCDRCKERFIWPENMLRHKEIQELCDSQSKKTIASSNSNSNAPSANIQISNCFVCPKTFSNTEYLNEHLMRHRFTPSTMKTIASTIHSICWKNRLKIIQCKICNKEFSSIIKLKEHYSKNLTNLCGTRQHSLVNYSITNEMGFELNLELDSEPETKFNRKRLSYRCCMCGKSFKQKFQITQHQIWEHNYEMLELKCERCAFRTVSQKVLDYHRMSQCFDVEKKYQCDQCNFKFMWQKNREDHISIFHTSNAFVKPLIYNHLQTYKPRCICKICLKLFQLPSHLASHMRYHSDKDPKRQLTGLTKYKKCPICGLYRKDIARHIRRHNKSQTPLKCDRCDKVFKSEMNLDIHQRLQACELRFKCTLCEKSFSHECRLKAHMRTHTGQRKYQCNFCQKKYLHKGTLKYHLLKHSGKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074825;
- 90% Identity
- -
- 80% Identity
- -