Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465277.1:99638281-99640306[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 14 7.9 1.4 3 23 202 223 201 223 0.94

2 10 0.088 11 8.2 1.1 6 23 232 249 232 249 0.98

3 10 6e-06 0.00077 21.3 4.2 1 23 255 278 255 278 0.96

4 10 0.00066 0.085 14.9 1.4 2 23 285 306 284 306 0.97

5 10 0.0023 0.3 13.1 0.1 1 23 313 336 313 336 0.96

6 10 0.6 77 5.6 4.6 2 23 340 361 340 361 0.96

7 10 9.8e-05 0.013 17.5 0.3 1 23 369 392 369 392 0.96

8 10 0.0001 0.013 17.4 0.1 1 23 399 422 399 422 0.97

9 10 1.2e-06 0.00015 23.5 2.0 1 23 428 450 428 450 0.98

10 10 1.2e-05 0.0016 20.3 2.9 1 23 456 479 456 479 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	14	7.9	1.4	3	23	202	223	201	223	0.94
2	10	0.088	11	8.2	1.1	6	23	232	249	232	249	0.98
3	10	6e-06	0.00077	21.3	4.2	1	23	255	278	255	278	0.96
4	10	0.00066	0.085	14.9	1.4	2	23	285	306	284	306	0.97
5	10	0.0023	0.3	13.1	0.1	1	23	313	336	313	336	0.96
6	10	0.6	77	5.6	4.6	2	23	340	361	340	361	0.96
7	10	9.8e-05	0.013	17.5	0.3	1	23	369	392	369	392	0.96
8	10	0.0001	0.013	17.4	0.1	1	23	399	422	399	422	0.97
9	10	1.2e-06	0.00015	23.5	2.0	1	23	428	450	428	450	0.98
10	10	1.2e-05	0.0016	20.3	2.9	1	23	456	479	456	479	0.98

Sequence Information

Coding Sequence: ATGTCAGTAAGACAATGCTGTAGTTTGTGCTGCACTCCATGCGATGATtataatttacttaaaaatgaATCGGGAGAAACCAATAAATTCTACGAAATTACAGTTAAATATTTTGATCCCATGTTGCTTACAGATGAAGCAAACTTGAATCTTCACCATATGCAGGTTCTTTGTCAAGACTGTTGGTATCACATAAACGAGTTTCATGAATTTCAGCAAACGGTGTTGAGAACTCGAATGCTTTGGGAACATAAAGATCAAATAGAAACTTCACCTATTGAAATAAAACCAGAAGATTGTGAAAATGTGGATACAAATACCCACTATAATAAAAGCTTTGATGTAAGTAATGATGAAGACGATCGACTTGATTATTTCGAAAGCCAACGTTTGAAAACAGAATCAATGACAATGTTAGAAGATACTACAGAATCGATAGATAACCAAGCCAATGGAAAGGAAAAAGAACCGAAAAAGAGCAAACTATCACAAGAGATTGACAAAACCAAGGATAAAAAtgaattacaatataaaactagACGTGACAGAATGCTAAAAGGAGTTACGGATGCTTTTATAGCTGAATGGAAACCTGAGTTACTATGTGGCATATGTAGTGAAAcctataataattttaataaattacgCAGTCACTTCAAAGAGAAACATAAAACaagcttttatataaaatgttgcGAAAAAAAGTTCGTCCACCGATATCGCCTGGTGAACCACATTCAATTACACCTTAATCCAGAAACTCACAAATGTGACATATGCGGAAAGCCTTGTTCAACTAAACAGAGTCTCAAACAACATATGAAAGAAATGCACGaagacacaaaaaaattaaaatgtgacATTTGTGAAAGGCTTTTTAAACGCAAAACTATATTGAAACGACATTTGCTCACACACGCCACGGGAAGTAAGGATTTCATTTGCTCTGAGTGTGGTAAGGGATATGTTGATGAACAATTGCTCAGATTTCATATTAAACGTGCACATGATCCTCGCGTTTGCGACCAGTGTGGTAGAACCATTCATGGATTCCATGCTCTAAAGAAACATCTCATGCATCATGCAGGCATTGAGCGCCCTAAATTCCCTTGTGATGTTTGTGGTATTAAACTGTCGACAAGAACTCTCCTTAAACGTCACCAGGCTTCCTACCACAACGATTGTACAACTATATATATTTGCGGCGTTTGCGGTAAAGTTACTGCAAGTGAACACGCCTTAGCGAAACACAAAAGAGTAGTACATGTAGAAAAACGTAAACATAAATGCACATACTGCGAAAAGGCTTTTAAATCTCCTAAGTCGTTGCGTGAACATATTGCAACTCATACGGGACAAGATCTGTATCAGTGTCCACATTGTCCTCAAACATTTAAAGGTAGTTCTAATATGTATAATCATCGGAAAAAAGTCCATCCAGTGGAATATAAGGAAGCTCAAAAAAATCGATTGCATCatccaaaaattaatagtaATCAAGTTAAAAAACTAGTTGTATTATAA
Protein Sequence: MSVRQCCSLCCTPCDDYNLLKNESGETNKFYEITVKYFDPMLLTDEANLNLHHMQVLCQDCWYHINEFHEFQQTVLRTRMLWEHKDQIETSPIEIKPEDCENVDTNTHYNKSFDVSNDEDDRLDYFESQRLKTESMTMLEDTTESIDNQANGKEKEPKKSKLSQEIDKTKDKNELQYKTRRDRMLKGVTDAFIAEWKPELLCGICSETYNNFNKLRSHFKEKHKTSFYIKCCEKKFVHRYRLVNHIQLHLNPETHKCDICGKPCSTKQSLKQHMKEMHEDTKKLKCDICERLFKRKTILKRHLLTHATGSKDFICSECGKGYVDEQLLRFHIKRAHDPRVCDQCGRTIHGFHALKKHLMHHAGIERPKFPCDVCGIKLSTRTLLKRHQASYHNDCTTIYICGVCGKVTASEHALAKHKRVVHVEKRKHKCTYCEKAFKSPKSLREHIATHTGQDLYQCPHCPQTFKGSSNMYNHRKKVHPVEYKEAQKNRLHHPKINSNQVKKLVVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397851;
90% Identity: -
80% Identity: -