Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465278.1:52824322-52826279[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2 1.5e+02 4.6 0.2 2 23 267 289 266 289 0.93

2 9 8.5e-06 0.0011 20.8 3.2 1 23 321 343 321 343 0.99

3 9 0.0002 0.026 16.5 0.6 1 23 352 374 352 374 0.95

4 9 7.4e-06 0.00095 21.0 1.9 1 23 382 405 382 406 0.95

5 9 0.49 63 5.8 3.0 3 23 413 433 412 433 0.96

6 9 0.0058 0.74 11.9 1.0 2 23 442 464 441 464 0.95

7 9 0.0015 0.2 13.7 0.9 1 23 472 495 472 495 0.96

8 9 1.8e-07 2.3e-05 26.1 1.0 1 23 501 523 501 523 0.98

9 9 1.1e-05 0.0014 20.5 2.0 1 23 529 552 529 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2	1.5e+02	4.6	0.2	2	23	267	289	266	289	0.93
2	9	8.5e-06	0.0011	20.8	3.2	1	23	321	343	321	343	0.99
3	9	0.0002	0.026	16.5	0.6	1	23	352	374	352	374	0.95
4	9	7.4e-06	0.00095	21.0	1.9	1	23	382	405	382	406	0.95
5	9	0.49	63	5.8	3.0	3	23	413	433	412	433	0.96
6	9	0.0058	0.74	11.9	1.0	2	23	442	464	441	464	0.95
7	9	0.0015	0.2	13.7	0.9	1	23	472	495	472	495	0.96
8	9	1.8e-07	2.3e-05	26.1	1.0	1	23	501	523	501	523	0.98
9	9	1.1e-05	0.0014	20.5	2.0	1	23	529	552	529	552	0.98

Sequence Information

Coding Sequence: ATGGAATCTTGTTTGTTATGTTTGGTTAATGAAAATGAGATGGTTGGTCGTATAAAAGTGAACTCTACACAATGGGAGACGGAGCACATAGAATTTTTAATACAGCAACATTTGTGGCCAATTAATATCGATACTTTTGAATGGATGTGTATTAGCTGTTGGAACCTTTTAGAAACTTTTCACAAATTTTATTTGCGTATAAAAGCAGCTCATGAAATTTTATCTTCAAATTGCAAACAGAAGAATGTAGAATGGctacaaaataaaaacaccCAATGCAATGAACAAAAAAGCTGTAGTGATTATAAACAGGAACACATTGGAAGTAATGTTGAATCGGAAATTTTAATCGAACAGTCGTCCTATAAAGAATATGAATTAGAAGATGAAAatcctttaataaaaatagagtCTGACGAAGACATTCTGGAAGAAATGCCACTTCGACAAAGGCGAAAAAGGTGTCGTAAGCCTAAAGATTTAGTATGTGGATTATTAGAGGAGAGTAATAAAGATCCGCTAAGAAAGAAGAATAGGTCCAAACCACTtgtaaaaaacataaaattaaaagaaactttaaaaacATCAAGAGTCTCGAGCGAAAATGAAAAGATTTGCAGTGAAATTTCCAATACAGTCCAGATATCGGTAGACGTGAACGAAAATTCAGGTTCTGATACAGAATATGAAGTTTACGATGATGAGCCACCATCTGAAACCTGTAAGAAAAAGCGTAAAAATCCTGACGAGAAAACTCGACTTGAACATGATAAAATTATTGCcgaatattttaaagtttattgTAGTCTTTGTCAAATaccaattgaaaattttatttctcttCGTAAGCACTTCCGTGAGGAACACAAAAAGCGTGGTTTTGTGATATGctgcaaaaagaaaattttcacaCGCCCTATTCTAGTTGATCACATACGTTTGCACTTGGACCctaacttttttaaatgtaaacagTGTGATAAAGTTTACTCCGACCGGTGTACTTTAGAGAGTCACATAAAAATCCATGAGGATGGTCAACTAGATCGTAACCATGCGTGTGATGCGTGTGGTAAGTCATTTGTCGGATCTACACAGCTAGAAACTCATAAACTAACACATGCTCCTGattatgaaaagaaattttCTTGTAGTGAATGTGGTAAATTttttacGACTTTATACAGCCTTAATTACCACATACAAGCAATACACCACAATAAATACGTAAAAATTTGCGACATTTGTGGAAAAACAATGCGTTGTCGTAATTCATTTAAACTACACAtggaaaaacatgacaacaaaTTAGCAACTCCGATTCACTGCGATATTTGTGGTCTACGTTTAATTGATAGGCGCGGTCTAAGGCGCCATAAAAACTCTCAACATCCCTTGGGAGGGAAAAAGGAATATTCTTGTCATATATGTTCGAAAATTTCGCCAAATCTAAGAGCTCTCCGCACACATGTACGTTTTGCACATGAAACAggctacatacataaatgtactATGTGTGACAAAGCATTTAAAAGACCAGAAGCATTAAAGGAACATATGGCTACACATACTGGCACTCCATTGTACACTTGCCCCTGGTGTCCAAAAACTTTTATATCGAACGGAAATATGCACAATCATCGTAAGAAGTCACATCCTAAAGAGTGGGAAGAAGCTCAACGAGAAAAATATGGTGGAATATTCCCATCAAATCATAAACCAACTATTACTTCCAATGTAAATATgaataacaaaaactaa
Protein Sequence: MESCLLCLVNENEMVGRIKVNSTQWETEHIEFLIQQHLWPINIDTFEWMCISCWNLLETFHKFYLRIKAAHEILSSNCKQKNVEWLQNKNTQCNEQKSCSDYKQEHIGSNVESEILIEQSSYKEYELEDENPLIKIESDEDILEEMPLRQRRKRCRKPKDLVCGLLEESNKDPLRKKNRSKPLVKNIKLKETLKTSRVSSENEKICSEISNTVQISVDVNENSGSDTEYEVYDDEPPSETCKKKRKNPDEKTRLEHDKIIAEYFKVYCSLCQIPIENFISLRKHFREEHKKRGFVICCKKKIFTRPILVDHIRLHLDPNFFKCKQCDKVYSDRCTLESHIKIHEDGQLDRNHACDACGKSFVGSTQLETHKLTHAPDYEKKFSCSECGKFFTTLYSLNYHIQAIHHNKYVKICDICGKTMRCRNSFKLHMEKHDNKLATPIHCDICGLRLIDRRGLRRHKNSQHPLGGKKEYSCHICSKISPNLRALRTHVRFAHETGYIHKCTMCDKAFKRPEALKEHMATHTGTPLYTCPWCPKTFISNGNMHNHRKKSHPKEWEEAQREKYGGIFPSNHKPTITSNVNMNNKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399787;
90% Identity: iTF_01399787;
80% Identity: -