Tgro037932.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:99595814-99597495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 16 7.7 0.5 2 23 205 227 204 227 0.93 2 10 0.037 4.7 9.4 0.6 6 23 236 253 236 253 0.98 3 10 8.3e-07 0.00011 24.0 2.6 1 23 259 282 259 282 0.97 4 10 0.00075 0.096 14.7 3.6 2 23 289 310 288 310 0.97 5 10 0.0069 0.89 11.7 0.2 1 23 317 340 317 340 0.94 6 10 0.088 11 8.2 1.4 3 23 345 365 344 365 0.96 7 10 0.00075 0.096 14.7 0.2 1 23 373 396 373 396 0.96 8 10 5.7e-05 0.0073 18.2 0.1 1 23 403 426 403 426 0.97 9 10 4.5e-05 0.0057 18.6 2.6 1 23 432 454 432 454 0.96 10 10 0.00041 0.053 15.5 4.0 1 23 460 483 460 483 0.98
Sequence Information
- Coding Sequence
- ATGTCAGTAAAACAATGTTGTAGTTTGTGCTGCAGTCCATGCGATGATtataatttacttaaaaatgaATCTGGAGAAAACAATAAATTCTACGAAACTACAGTTAAATATTTTGATCCCATGTTGCTTACAGATGAAGCAAACTTGAATCTTCACCATATTCAGGTTCTTTGTCGAGACTGTTGGTATCACATAAACGAATTTCATGAATTTCAGCAAAAGGTGTTGAAAACTCGAATGCTTTGGGAACATAAAGATCAAATAGAAAATTTGCCTATTGAAATAAAATCAGAGGATTGTGAAAATGTGGATACAAATACCCActataataaaagttttcatGTAAGTAATAATGAAGACGATCGACTTGATTTTTTCGAAAACCAAAGTTTGAAAACAGAATCCATGTCAAGGTTAGAAGATATTACAGAATCGATAGATAACCAAGTCAATGGAAAGGAAAAAGAACCGGAAAAGAGCAAACTATCACAAAAGATTGACAAAACGAAGGATCAAAATGAATTACCATATAAAACTAGACGTGtcagaaagcaaaaaaaaataacgactAGAGTTTCGGATGCTTTTATAGCTGAATGGAAACCTGAGTTAGTATGTGATATATGCAGTGAAACCGCTAATAATTTTGATAAATTACGCAGTCACTTCAAAGAGAAACATAAAACGaggttttatataaaatgttgcGGAAAAAAATTCTTCCAACGAAATTTCCTGGTGAACCACATTCAATTACACCTTAATCCAGAAACTCACAAATGTGGTATATGCGGAAAGACTAGTACAACTAAACAAAATCTCAAACAACATATGAAAGTAATGCACGAAGACACAAAACAATTGAAATGTGACATTTGTAAAAAGCTTTTCAAACTCAAATGTACATTGGAACGACATTTGCTCACACACGCCACGGGAAGTAAGGATTTCATTTGCTCTGAGTGTGGTAAGGGATATGTTGATGAACAAttgcttaaatttcatgttaaaCGTGTACATTATGCTCGCATTTGCGACCAGTGTGGTAAAGCCATTCATGGATTCCATGCTCTAAAGAAACATCTCATGGAGCATGCTGGTATTGAACGCCAACAATTCCCTTGTGATGTTTGTGGTCTTGAACTGACGTCAACAAATAGCCTTAAACGTCACCAGGCTTCCTACCACAACGATTGTACAACTATATATGTTTGCGGTATTTGCGGTAAAGTTACTGCAAGTGAACGTGCCTTATCGAAACACAAAAGAGTAGTACATGTAGAAGAACGTAAACATAAATGCACATACTGCGAAAAGGCTTTTAAATCTCCTAGAGCGTTGCGTGAACATACTACAAATCATACGGGAAAAGATCTGTATCAGTGTACACATTGTCCTCAAACATTTAAAGGCAGCACTACTATGTATAATCATCGGAGAAGAGTCCATCCAGTGGAATATGAggaagctaaaaaaaatcgattgcaacatccaaaaattaatagtaatcaagttaaaaaattagttgtaatataa
- Protein Sequence
- MSVKQCCSLCCSPCDDYNLLKNESGENNKFYETTVKYFDPMLLTDEANLNLHHIQVLCRDCWYHINEFHEFQQKVLKTRMLWEHKDQIENLPIEIKSEDCENVDTNTHYNKSFHVSNNEDDRLDFFENQSLKTESMSRLEDITESIDNQVNGKEKEPEKSKLSQKIDKTKDQNELPYKTRRVRKQKKITTRVSDAFIAEWKPELVCDICSETANNFDKLRSHFKEKHKTRFYIKCCGKKFFQRNFLVNHIQLHLNPETHKCGICGKTSTTKQNLKQHMKVMHEDTKQLKCDICKKLFKLKCTLERHLLTHATGSKDFICSECGKGYVDEQLLKFHVKRVHYARICDQCGKAIHGFHALKKHLMEHAGIERQQFPCDVCGLELTSTNSLKRHQASYHNDCTTIYVCGICGKVTASERALSKHKRVVHVEERKHKCTYCEKAFKSPRALREHTTNHTGKDLYQCTHCPQTFKGSTTMYNHRRRVHPVEYEEAKKNRLQHPKINSNQVKKLVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397837;
- 90% Identity
- -
- 80% Identity
- -