Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465277.1:155631599-155635652[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00084 0.11 14.5 1.1 2 23 238 259 237 259 0.96

2 10 5.3 6.7e+02 2.6 3.4 1 23 264 286 264 286 0.94

3 10 4e-06 0.00051 21.9 3.4 1 23 292 315 292 315 0.97

4 10 0.00029 0.038 16.0 0.6 2 23 322 343 321 343 0.96

5 10 0.00059 0.075 15.0 7.0 1 23 349 371 349 372 0.95

6 10 3.9e-05 0.0049 18.8 1.0 2 23 391 412 390 412 0.97

7 10 4.4e-06 0.00057 21.7 0.5 1 23 418 440 418 440 0.99

8 10 6.9e-05 0.0089 18.0 3.5 1 23 446 468 446 468 0.97

9 10 3.6e-07 4.6e-05 25.1 0.7 1 23 475 497 475 497 0.98

10 10 0.027 3.4 9.8 1.8 1 23 503 526 503 526 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00084	0.11	14.5	1.1	2	23	238	259	237	259	0.96
2	10	5.3	6.7e+02	2.6	3.4	1	23	264	286	264	286	0.94
3	10	4e-06	0.00051	21.9	3.4	1	23	292	315	292	315	0.97
4	10	0.00029	0.038	16.0	0.6	2	23	322	343	321	343	0.96
5	10	0.00059	0.075	15.0	7.0	1	23	349	371	349	372	0.95
6	10	3.9e-05	0.0049	18.8	1.0	2	23	391	412	390	412	0.97
7	10	4.4e-06	0.00057	21.7	0.5	1	23	418	440	418	440	0.99
8	10	6.9e-05	0.0089	18.0	3.5	1	23	446	468	446	468	0.97
9	10	3.6e-07	4.6e-05	25.1	0.7	1	23	475	497	475	497	0.98
10	10	0.027	3.4	9.8	1.8	1	23	503	526	503	526	0.96

Sequence Information

Coding Sequence: ATGGATCTAGAAATGTGTAGAATTTGCGGAGGTGttcaacatttgaaaaaaattgtagtGGAAGATGCTGAAATGATGAATAAACTGCTGCTCTGTGCAAACATAAATATGACTAGTGGAGACTTACTTCCTAAACTAATATGTGTACAATGCGACAAGAATTTAGATCTTTGTTATAGCTTAAGGAAACAAAGCGAAGCTACACAAAAGCGTTTAAGGCtggaaatacaaaaaaaacaaaaagccaATGATAACTGGGTGCCAGAAGTAATTAAAACAAACGAACAAATTGATCTGTCTCAAGACTCTGAAAATAGTATTGATTGCACGATACATAGAAAATGTAGCGAAGAGGCTTCAAGTGCAAGCTACAAAACGTATGAAGATAAAGAAATTGAATTcaaccaagataaatttaaatgcGAAACATTGCATCAGGAAATTGCCGATAAAAAGGAAGAACATTTTGAACAAATTGGCATGCTAATTGAGACACCAGAAGTTGATGATGTTGGTCATATAGAAAGTACTGAGCTCTCTTCtacttttgatgatttttttacaAGCAGCTGTTTTAATACACTAAAGGAAGTAACTGAAGTTCCGATTATTTCTGAATATTGTAGCATTGATTTATTATCATCGCCTGAATCCTCAACAAATGAATGTGGTTTGTTAATAAATGATCAAGTTAAAACCAATGATGATTTAACATGCGGTACATGTCATGCCGTTTTTACTGATAAAAATGAATACAGATTGCATATTAAAGAACACGGACTTGATCGATACCAATGTATACAGTGTTGCAAATTCTTCCCCTCAAGTTTTCGTTTGAAACGTCATGAAGAAATTCACAGTGAAATGCCTTTTCACCAATGCCCGCATTGTAACCGAAGTTACAGAGCTGCATATAATCTTAAACGTCATATAAAATCAGCGCATTTGGGAAAAAAGACTTGGGAATGTAAATTATGCAATTTTAGTTTCTCCCGCGTCGATGTTTTAAAGCGTCATTTGCAACTACACTCCGACGAAAAAAAATTCGACTGTTCAAAGTGTTCgcaaagCTTTAAAACAAGGGACTATTTATATGCGCATCATAAAACACATCATCCAGATTTatctaaaagtaaaaaacaaatcaaaaaagataATGTAAGTAAAAATCAATGCGGTTATTGTGGTAAAATGTTCAAGTctttatttacttataaaaatcatttactGATTCATACAAATGAAAAGCCTTACAAATGTGATGCTTGTAATAAAAGCTTTCGAACTATTGCTGCTCTCACTACACATCAACGTATTCATGATGACTATCGACCCTATCAGTGCGATTTGTGCCTAAAAAGTTTTCGACAAACCTCACATTTAAAAGATCACAGACTGTTACACTTAGAGAATGTGCCAAAACATGTGTGCTCAATTTGTGAAGCATCATTTGCTAAGAAAAGTAACTTAAAGGCACATATGCGCATACATACAAATGAAAAACCTTTTAAATGTGCCGACTGTTCTTCTGAGTTTAGCTTTATGCATTTGCTTCAACGTCATGCAAGCAAAGTTCATTATAGAAGTGCGCACAAAGTTTATACTATAAATGACGGTGATATAGATGGAGTGGATAATGGAATCAGTAACACCGATAACGTGGAGAGTGAGGCGTACCATTATATTAGCACGATGGAGGATGACGATGATGAAGCTGAGAAAAAGGCATCACATTTCGTGGATTTTTTTGAAGATACTCAAAGTATTCTTGAAGCACCATCTTCTCATGAATTAGAACTATCTGCTAAGCGCGAAGTTAACCAACACATTTTCTACGACAAGATTTGCGCTTCTTCCGAAAGCGTGCCTGTTGTAAATGCGGATGAAATACATTCGTTAAACTTTACGCGGCCACAACCCTCTGACGAAGATTTTGTTCAACAAATAAACGACTGTGAAAATAACATCAAAGAACAAAAAATAGATATTTTTGTTACTGAAGAAACTAAATTAACTATCCCGGGTTACAATGATTACAAAATGAAATAa
Protein Sequence: MDLEMCRICGGVQHLKKIVVEDAEMMNKLLLCANINMTSGDLLPKLICVQCDKNLDLCYSLRKQSEATQKRLRLEIQKKQKANDNWVPEVIKTNEQIDLSQDSENSIDCTIHRKCSEEASSASYKTYEDKEIEFNQDKFKCETLHQEIADKKEEHFEQIGMLIETPEVDDVGHIESTELSSTFDDFFTSSCFNTLKEVTEVPIISEYCSIDLLSSPESSTNECGLLINDQVKTNDDLTCGTCHAVFTDKNEYRLHIKEHGLDRYQCIQCCKFFPSSFRLKRHEEIHSEMPFHQCPHCNRSYRAAYNLKRHIKSAHLGKKTWECKLCNFSFSRVDVLKRHLQLHSDEKKFDCSKCSQSFKTRDYLYAHHKTHHPDLSKSKKQIKKDNVSKNQCGYCGKMFKSLFTYKNHLLIHTNEKPYKCDACNKSFRTIAALTTHQRIHDDYRPYQCDLCLKSFRQTSHLKDHRLLHLENVPKHVCSICEASFAKKSNLKAHMRIHTNEKPFKCADCSSEFSFMHLLQRHASKVHYRSAHKVYTINDGDIDGVDNGISNTDNVESEAYHYISTMEDDDDEAEKKASHFVDFFEDTQSILEAPSSHELELSAKREVNQHIFYDKICASSESVPVVNADEIHSLNFTRPQPSDEDFVQQINDCENNIKEQKIDIFVTEETKLTIPGYNDYKMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01074795;
90% Identity: -
80% Identity: -