Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465278.1:40299763-40309890[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.2 7.9e+02 2.4 0.5 2 23 409 431 408 431 0.91

2 10 0.028 3.5 9.8 0.1 6 23 441 458 441 458 0.99

3 10 9.7e-05 0.013 17.5 2.7 1 23 464 486 464 486 0.98

4 10 2.5e-05 0.0033 19.3 2.9 1 23 499 522 499 522 0.92

5 10 2.5e-05 0.0033 19.3 2.0 1 23 530 553 530 553 0.98

6 10 2.6e-05 0.0034 19.3 2.1 3 23 561 582 559 582 0.92

7 10 0.023 2.9 10.0 0.4 2 23 594 616 593 616 0.96

8 10 0.0008 0.1 14.6 6.2 1 23 623 646 623 646 0.93

9 10 2.6e-06 0.00034 22.4 0.7 1 23 652 674 652 674 0.98

10 10 0.00015 0.019 16.9 1.3 1 23 680 703 680 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.2	7.9e+02	2.4	0.5	2	23	409	431	408	431	0.91
2	10	0.028	3.5	9.8	0.1	6	23	441	458	441	458	0.99
3	10	9.7e-05	0.013	17.5	2.7	1	23	464	486	464	486	0.98
4	10	2.5e-05	0.0033	19.3	2.9	1	23	499	522	499	522	0.92
5	10	2.5e-05	0.0033	19.3	2.0	1	23	530	553	530	553	0.98
6	10	2.6e-05	0.0034	19.3	2.1	3	23	561	582	559	582	0.92
7	10	0.023	2.9	10.0	0.4	2	23	594	616	593	616	0.96
8	10	0.0008	0.1	14.6	6.2	1	23	623	646	623	646	0.93
9	10	2.6e-06	0.00034	22.4	0.7	1	23	652	674	652	674	0.98
10	10	0.00015	0.019	16.9	1.3	1	23	680	703	680	703	0.97

Sequence Information

Coding Sequence: ATGGTGGTTAAATGTATACTTTGCTTAGAAAATCCTACAATACCGGGTccaaaatttttagaaatatttggAGAAGATGGTTTACGTCTAGATATAAGTTCGATtataaacaaacatttttggttAAAGACAAACAGGAATAGTGAAGATGTACAACAAATATGTATGACTTGCTGGGAAGTGGTAAGAGACTTTCACATACTTTATCAAAGAGTAGAGGAAGTGCACAAACATATAGGAGTCAATACAATAGTATTGGATGATCCGCTACCTCAGGATGTTATGCTTAAGTCGGAAGATGACACTTCTATGGCACAAGACCCCATTATGGGAGATAATGGTATTAGTGATTCTATATTCGATCCAGAAGTAAAAGTTGAAGTACATGATTTGGATTTGTTGCCACAAATAGAAATATTAGAGACTGCAAACGTATCCGAAAGAAGTGCGAGATCAAGTCGACGTGGACGACCGCCAGCAAGGGAACAGAGCCCAAAAATATCGGCAAAACGCATTAAAAAAGAACAATCTCCTGCAGCTGATACAACTTTAGATGTTTTCAGTTCCACTGAAAATCTCAAAAAGGATGACTTAAATGTTTCTACTTCTTTGGAAGACAAGAATCTGGTATCAAATTCTGTTGATAAAGATGAAAGTAGTAATAAAAGAAGGGGAAGACCTCGAAAATCAGATATGGAGAAACCTAAGCCAATTACGACTCGTATAAAGCGATCAAAGAAACAATCGCAGAATTCGTCTGAGACGGAAATAAAAAACGAAAAGGATGAAGATCAGCCATCGTGTTCAACTGCTCAACCGGGCACCTCCGCAACAGCCgagcagaaaattaaaactgaaaGTCCTGCGGAGGAACCACATTCAAATGATTTCGTTGTTGCCCCACAAAAttttgatgatgatgatgcctATGCACAAGACGACTACGATGACGACAACGATAATAACTATGCTAAGGACTCTGATACATCCTCAAGCTCGGAATCGGAAGCAGAGGAATCTGATTGTTCAGACTGGGGtgaagaaaaaaagaagaaagaaaaatttgctgttattatgaaaaaagaaaggaatgttcctaaaaaatataagaaaagagAAAAGCCTTCGGTGGAACCAAAACGCATGAGTCGTGAAGAAATTGAGGCTCGCCAAGCACAACAGGCTGAATATGATTCTATCATtacaaaattctttgaaaaaatACGTTGTCCCAAGTGTGAACTTTTAGTTCATACGTTTGGTGAAATGCGAGCACATTTCCGTTTGGATCATAACGATGATCATGGCTTTGTGGAATGTTGTGGTCGTCGATTTGCTACTCGCAAGTTTTTGGCCGAACACATATTAGTCCATTACAATCCAGAGCATTTCAAATGCAAAACATGTGATAAGGTGTGTCGAGATTCTACCCAATTAGAAGGCCATGAGCAAACTCACTTACCCAATCCACCTCCATCGAAATACAAAAAAACGTTCCAGTGtgaaaaatgttcaaaaacatTTTCCTCAAAAGCTTCTTTTGAACATCACATGGTAGCGAAGCATGTACCGAGAGAAGAATTCAAATTTGAATGCCCTGAATGCAAGAAAAAatgtCCCACTGAAACAAAACTGAAAGATCACATGCGCAGTGTACATGATCCGCAGAGAACGGTGATATGTGATAAGTGtggaaaaacatttaaaagtaCCTACAGTCTTAAAAAACATCACGAACTGGAACATTCGGATATACCCAAACCAGCTCCCATTCCTCAGCAGTGTGAAATTTGTGGCGCTTGGTTAAGACACCTGTCCGGTCTAAAACAAcacatgaaaaatatacatgaGTCTGTGCAGACTGAACATCGTTGTCACATCTGCAATAAAGTATCATCCACTTCTAGAGCTCTCAAAAGACATATTTATCATAATCATGAGTGTGTTAGAAAATTCCAGTGTACTATGTGTGATAAGGCATTCAAAAGAGCTCAAGATTTAAGGgAGCATACTTCCGTTCATACAGGCGAAGTGTTATATACCTGTCCAAATTGTCCCATGACTTTCTTTTCGAATGCCAATATGTATAAACACCGCCAGCGTTTACATCGTGCCGAATGGGAGGCCGATCGGAGTAAACCCATACCGCCAAATATTATGAAACAAGCTAAACAAGGCAGtaaatttgttaaaacaaaacGCTCTCCTGGTGAAACTACGCCATCTCAGTTGATAGCTCCTATGCCCATTATACCGCCATCAACAAACGCTCTTCACACCGTTTTAAATCCTCAAATATTATATGCAAATATGACATTACATTGA
Protein Sequence: MVVKCILCLENPTIPGPKFLEIFGEDGLRLDISSIINKHFWLKTNRNSEDVQQICMTCWEVVRDFHILYQRVEEVHKHIGVNTIVLDDPLPQDVMLKSEDDTSMAQDPIMGDNGISDSIFDPEVKVEVHDLDLLPQIEILETANVSERSARSSRRGRPPAREQSPKISAKRIKKEQSPAADTTLDVFSSTENLKKDDLNVSTSLEDKNLVSNSVDKDESSNKRRGRPRKSDMEKPKPITTRIKRSKKQSQNSSETEIKNEKDEDQPSCSTAQPGTSATAEQKIKTESPAEEPHSNDFVVAPQNFDDDDAYAQDDYDDDNDNNYAKDSDTSSSSESEAEESDCSDWGEEKKKKEKFAVIMKKERNVPKKYKKREKPSVEPKRMSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLEGHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHELEHSDIPKPAPIPQQCEICGAWLRHLSGLKQHMKNIHESVQTEHRCHICNKVSSTSRALKRHIYHNHECVRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRSPGETTPSQLIAPMPIIPPSTNALHTVLNPQILYANMTLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00742164;
90% Identity: iTF_01399751;
80% Identity: -