Tgro039518.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:148920182-148928159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.017 2.2 10.4 3.4 1 23 83 106 83 106 0.97 2 23 0.12 15 7.8 3.1 2 23 166 187 165 187 0.97 3 23 3.3 4.3e+02 3.2 1.2 1 23 264 287 264 287 0.93 4 23 1.4 1.8e+02 4.4 0.8 2 23 295 316 294 316 0.94 5 23 0.041 5.2 9.2 0.2 2 20 377 395 376 398 0.94 6 23 0.014 1.8 10.7 2.5 1 23 593 616 593 616 0.96 7 23 6e-05 0.0077 18.1 0.7 1 23 622 645 622 645 0.97 8 23 0.061 7.9 8.7 0.3 2 23 676 697 675 697 0.96 9 23 0.59 75 5.6 0.5 1 23 774 797 774 797 0.96 10 23 0.091 12 8.1 2.7 2 23 805 826 804 826 0.97 11 23 0.041 5.2 9.2 0.2 2 20 886 904 885 907 0.94 12 23 0.0078 1 11.5 2.3 1 23 980 1003 980 1003 0.94 13 23 0.015 1.9 10.6 0.4 1 22 1010 1031 1010 1031 0.95 14 23 0.00028 0.036 16.1 1.6 2 23 1086 1107 1085 1107 0.96 15 23 0.85 1.1e+02 5.1 0.1 2 19 1134 1151 1133 1153 0.85 16 23 0.0015 0.19 13.8 6.4 1 23 1200 1223 1200 1223 0.98 17 23 0.027 3.5 9.8 1.1 1 23 1260 1283 1260 1283 0.96 18 23 0.51 65 5.8 0.1 1 23 1346 1369 1346 1369 0.95 19 23 7.5e-06 0.00096 21.0 1.8 1 23 1379 1401 1379 1401 0.99 20 23 1.9 2.4e+02 4.0 0.3 5 23 1422 1440 1421 1440 0.88 21 23 0.00022 0.028 16.4 0.5 1 23 1446 1468 1446 1468 0.99 22 23 6.6e-05 0.0084 18.0 4.4 1 23 1474 1496 1474 1496 0.99 23 23 2.1e-05 0.0026 19.6 2.0 1 23 1502 1524 1502 1524 0.97
Sequence Information
- Coding Sequence
- atggataaTGAAGAGAAATTAATAATAGGACTAGTTGTTAATTTGCAAGAGCAATCTCTACTATTAATGCAGTGTGTAGAATCCATAAAAAGCTTACTGGAGGAAGAAGATGATGAAGACatagttttgTCCGCATCCTACAATGCAAGTGAACATGACCTGGTCACTAGtCAGCCATTCGGAAAGAGAACTGAAGAAGAATTCTGCAAATACGAGTACTTTCCAATCGAAAAAGTCGACAATAATTTCGTGTGTGGGATATGCAACAAATCATATACTTTAAATAGAAATTGTCGCAGGCATATATTCACGATGCACTACCAAGGGAAATTGTACAAATGTGCATATTGCGATCAACATGCACAATGTCAAAATTACTTAATTGGTCATCTTAAACGTAAACATCCAGACGAATCATTTGAATCCAATGCGACACAATTAGGTCGTTTGTTTGGGGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAGTAGAGTGTAAGCTGTGTTGTACTACttttgtaactaaaaaaaaacttcttcaGCATCTAGAGACCCATAGTGAGGATAGTACTCTAGACAGTTTACAATTAAGCAGTGATGTTATTAAGCGTTGGTTTCCAAATAAGAGAAATTTGCAAGTTATAAAAGCAATGATATGTAAAGATATTCGAGAAAAAAACTTGGTCAAatattacacaattttaaatgaCTTTTCCTATGAAATATCCATTAGTGATACGGATTTAGAAGATTTGGAAGAAGAAACAGAAGCACCTGCcattaaatataaatgtgaatTGTGTGCAaaagattttttgtataaatatcaAGCGTTTGCTCATTTCAGAGAGAATCATTTGAACGAAGAAATTCCTTCGAAATGCATATATTGCAATCTGGAATTTATAtcaataaaaatgtatgaacaaCACAAACAAACCCATTGTCTGAATGAACATAAACTATTACTTTGCCCCAATTGCAATGGTAAGTTTGTCTGGCTCGAAAACATAAGAAAACACGATTGTGTTACGAAAATATTGGATATTGAGAAACCTCGAAAAGTTAAAATAAGGAAGCGTTACAATGATGAAATGCGCTCATCGCCAAAAACTATCATTATAAGATGTGGTCTTTGTGAAATGACCTTTGAAAAACTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGATTGTATTTATGTAAATcaatttgaaaatgtatcaagCAATCGTGAATTGTTGGAACAGAAGATTAAAAATGCCTTCACGAAACGTGAAATAAGTCAATTGTATCAAGCCACCGATAAAGACGGCAAAGAAATGGACATTTTAGATTCGGATAACGATGAAGGTGATGCTGGTAACGACAATAGAATAAACTATGCTGTAAAAGaagATACTCGTGATCGTTTTATGGAAACCATGGAAGAGGATATTGAGCTCGCTTTGGATACGTGGAAATACGAACAAAGatcccaaaatgaagaaaatcgAGTTCTTGGAGATGATGTTAACAATTATAATTCCGATAACAGaTCCTCAAATGAAGAAATAAATCAATTTCTTGGAGATGATAACGATTATGATTCCGAAAACAGTTCTACGACGGACGAAAGCGATCATATGTTTGAAAAAAGGAAGAAGGAAGGTGAAGTGAACAAGAGCGGTCAGCGATTCGATAAAAAGAAGAATGACAACAGAGATAAAGTATACGAACAAATTGAAAAAGTCCACGGTAATTTTGTATGTGCCGTCTGCAAAAAATCATTTACTATGCAGAAATTATGTCGCAGACACATACTTGTGACGCACAGACAAAGACAATTGTTCCAATGCCAATTTTGCGACAGCACTTATAGAGATAAGTCCAATTTAATCACACATATTGCACGAGTTCATCCTGGCGAGTCATTTGAATCCAATGAGAAACAATTAGGTCGTTTGTTTGGGGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAGTAGAATGTAAGCTGTGTGGTTCTATTCTCACGAGTAAAAAAACACTTCTTCAGCACTTAGATAGCCATAGTGAGGCCAGTACTCTTCACAGCTTAAAATTAAGCAGTGATGTTATTCAGCGTTGGTTTTCAAATATGAGCGATTTGCAAgacataaaaacaacaatatgcAAAGACATTCGGGAGAAAAATTTGTTCAAatattacacaattttaaatgaCTTTTCCTATGAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAGAAGCACCTGCCAACAAATATAATTGCGAATTGTGTGCAAAAGATTTTCTGTACAAATATCAAGTGTTTGCTCATTTGAGAGAGGATCATTTGAACGAAGACATTCCTTGGAAATGCAGCCATTGCAATCTGAAATTTATAtcaataaaaatgtatgaacaaCACAATCAAACTCACTGTCAAAATGAACATAAACTATTGTTGTGCGCCAATTGCAATGGCAAGTTTCTTTGGctcgaaaatatgaaaaaacacaATTGTGTTACGAAAATATTATATGTAGAACAATTTCTGAAAGataaaattagtgtaaagtGTAATGAAGTAATCCGTTCATCGCCCAAATCTATAATAAGATGTGGTCTTTGTGAAATGACCTTTGAAAAATTGCGCGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACTGGAGTTGACTTTGATGGTTGTTTTTATGTAAATCAGTTTGAAAATTGTAACAACAATCGCGAATTGTTGCAACAGATTATTAGAAATGCATTTACGAAACGTCAAATAAGTCAGCTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGATATTTCAGATTCGGATAGCGATGAAGGTGATGCTGATGGtgaaaaaagttatttgtgTGAACTTTGCtatgaaacatttaaaaaacgaAAACTTCTATTTAATCATCAAAAGGAACAACACCAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGTTACAACAACATTTAAAGAGGGAATGTTGGAATGAAGATCGACGAGAAGCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATACagCGATACATACGTATCAAAAATTCACTGCCTACGAACTTTTGTCGTGACAATATCCAGATTTGCTATTGTTTCTTATGTCCCAAAAATTTCTCAAATGCTGATCTTTTAAATGATCATTTGATGCGCCATCGCTTAACACCATCCATCATCAAAACCGTTGCAAGCACAATACATTCTACATGGTGGCCAAATGGTAAAAAGAtcataaaatgcaaaatatgtaACCGAGCATTTTTAAGTATGGCCGCATTAAATGAACACTTCTCTctaaaaaatcctaaaaacTTGTGTGGTGCCAAGCAGCATTATCTGGAAAATTACTCGATTACTAACCAAATGGGGTTTGAATTACATTTAGAGCTGGATTCAGAGACAGAAACTgaagaaaatgaaaatatattgcCATATACATGTTGCTTGTGTAGTAAATCATTTAAGCGAAAGTTTCAAATAACTCAACATCAAAGATCCATGCACAATTATGAATTATTGGAACTCAAATGTGAACGTTGTGTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAGAATGAGTCAGTGTTTTGATGTTGAGAAACAATATCAATGCGATCAGTgtaatttcaaatttatgtggCAAGAGAACCTTAAAAATCATGTTTCGATATTTCATAATTCAAACGTTTTATTCAAAACATTGGACAAAGCTTCATCAAATGATTTATCAttacaacaaaactatttaGATGAACGGGATCGCATTCAATTTGTagataaatttcaatgtataaTTTGTGGAATTTACATAATCAAAAATCATTATTCAGAACATATTAGTAGACACAAATATGGCAAATCTTACAATTGCAGTCTTTGTGAAATGGTTTTTTTAACACCTTTGGGCTTAGCGAAGCATAGGAGCATGAGCCATAAGATTTTATACAACGACGAACGACCATACAGATGCACAATTTGTTCGAAATTCTATAGAAGATGGGGACAACTGTCGCTTCATATGCAACGTCATGCAGATGGAAAGCTAAAGACACAAAACAATTTATCGACCCCagacaagaaaaaatttaaagtatgtCCAATTTGTGGTGTCCACAGAACAAATATTGAAACACATATTAGAATCCACACGGAGGAGACGAAATTCAAGTGCGATCTATGTGATAAAATCTTAAGCAACGAAGTTAGTTTATATGTGCATCGGCGCACTCACTTTAATAAACGTTCTTTTAAATGTACACTTTGCGAGAAAGCATATTTCCATAAATACCAATTAAATGATCACATGCGTTCTCACACTGGTGAGCGTCCATTTCAGTGCACTGTTTGCGATAAAAGATTTACATATTCGCGCAGTTTGATTCGGCATTCGCTTAGTCATACTGGTAATAGTTAA
- Protein Sequence
- MDNEEKLIIGLVVNLQEQSLLLMQCVESIKSLLEEEDDEDIVLSASYNASEHDLVTSQPFGKRTEEEFCKYEYFPIEKVDNNFVCGICNKSYTLNRNCRRHIFTMHYQGKLYKCAYCDQHAQCQNYLIGHLKRKHPDESFESNATQLGRLFGERLYSKPLLLPRVECKLCCTTFVTKKKLLQHLETHSEDSTLDSLQLSSDVIKRWFPNKRNLQVIKAMICKDIREKNLVKYYTILNDFSYEISISDTDLEDLEEETEAPAIKYKCELCAKDFLYKYQAFAHFRENHLNEEIPSKCIYCNLEFISIKMYEQHKQTHCLNEHKLLLCPNCNGKFVWLENIRKHDCVTKILDIEKPRKVKIRKRYNDEMRSSPKTIIIRCGLCEMTFEKLRDLRQHMPLHADGKTGVDFNDCIYVNQFENVSSNRELLEQKIKNAFTKREISQLYQATDKDGKEMDILDSDNDEGDAGNDNRINYAVKEDTRDRFMETMEEDIELALDTWKYEQRSQNEENRVLGDDVNNYNSDNRSSNEEINQFLGDDNDYDSENSSTTDESDHMFEKRKKEGEVNKSGQRFDKKKNDNRDKVYEQIEKVHGNFVCAVCKKSFTMQKLCRRHILVTHRQRQLFQCQFCDSTYRDKSNLITHIARVHPGESFESNEKQLGRLFGERLYSKPLLLPRVECKLCGSILTSKKTLLQHLDSHSEASTLHSLKLSSDVIQRWFSNMSDLQDIKTTICKDIREKNLFKYYTILNDFSYEISISDTDAEDLEEETEAPANKYNCELCAKDFLYKYQVFAHLREDHLNEDIPWKCSHCNLKFISIKMYEQHNQTHCQNEHKLLLCANCNGKFLWLENMKKHNCVTKILYVEQFLKDKISVKCNEVIRSSPKSIIRCGLCEMTFEKLRDLRQHMPLHADGKTGVDFDGCFYVNQFENCNNNRELLQQIIRNAFTKRQISQLYQAIDKDGKEMDISDSDSDEGDADGEKSYLCELCYETFKKRKLLFNHQKEQHQDVSMPFTCKECKMQYVSIDLLQQHLKRECWNEDRREAEQCDCCKERFIWPENMLRHKEIQRYIRIKNSLPTNFCRDNIQICYCFLCPKNFSNADLLNDHLMRHRLTPSIIKTVASTIHSTWWPNGKKIIKCKICNRAFLSMAALNEHFSLKNPKNLCGAKQHYLENYSITNQMGFELHLELDSETETEENENILPYTCCLCSKSFKRKFQITQHQRSMHNYELLELKCERCVFRTVSQKVLDYHRMSQCFDVEKQYQCDQCNFKFMWQENLKNHVSIFHNSNVLFKTLDKASSNDLSLQQNYLDERDRIQFVDKFQCIICGIYIIKNHYSEHISRHKYGKSYNCSLCEMVFLTPLGLAKHRSMSHKILYNDERPYRCTICSKFYRRWGQLSLHMQRHADGKLKTQNNLSTPDKKKFKVCPICGVHRTNIETHIRIHTEETKFKCDLCDKILSNEVSLYVHRRTHFNKRSFKCTLCEKAYFHKYQLNDHMRSHTGERPFQCTVCDKRFTYSRSLIRHSLSHTGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -