Basic Information

Insect: Tachina grossa
Gene Symbol: -
Assembly: GCA_949987645.1
Location: OX465276.1:170834755-170836479[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-05 0.0016 20.3 2.3 1 23 99 121 99 121 0.96

2 11 0.00014 0.018 17.0 3.6 1 23 127 150 127 150 0.97

3 11 3.3e-05 0.0042 19.0 0.8 1 23 156 178 156 178 0.97

4 11 0.0014 0.18 13.8 2.6 3 23 186 206 184 207 0.95

5 11 4e-07 5.2e-05 25.0 0.5 1 23 214 236 214 236 0.98

6 11 0.014 1.7 10.7 1.2 3 23 244 265 242 265 0.94

7 11 0.98 1.3e+02 4.9 0.2 3 23 273 292 271 292 0.90

8 11 1.9e-06 0.00024 22.9 1.8 1 23 298 320 298 320 0.98

9 11 0.0088 1.1 11.3 5.2 1 23 326 348 326 348 0.99

10 11 0.02 2.5 10.2 0.7 1 23 354 380 354 380 0.84

11 11 0.073 9.4 8.4 0.2 1 21 386 406 386 407 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-05	0.0016	20.3	2.3	1	23	99	121	99	121	0.96
2	11	0.00014	0.018	17.0	3.6	1	23	127	150	127	150	0.97
3	11	3.3e-05	0.0042	19.0	0.8	1	23	156	178	156	178	0.97
4	11	0.0014	0.18	13.8	2.6	3	23	186	206	184	207	0.95
5	11	4e-07	5.2e-05	25.0	0.5	1	23	214	236	214	236	0.98
6	11	0.014	1.7	10.7	1.2	3	23	244	265	242	265	0.94
7	11	0.98	1.3e+02	4.9	0.2	3	23	273	292	271	292	0.90
8	11	1.9e-06	0.00024	22.9	1.8	1	23	298	320	298	320	0.98
9	11	0.0088	1.1	11.3	5.2	1	23	326	348	326	348	0.99
10	11	0.02	2.5	10.2	0.7	1	23	354	380	354	380	0.84
11	11	0.073	9.4	8.4	0.2	1	21	386	406	386	407	0.95

Sequence Information

Coding Sequence: atggtaCGTAGTCGCCGCTCCATATCCAAAGAAGATGTTTCTGTATTGGCCGATAGTGGGATATCGTTGTCATCACCCCCGGCAAGTCGAAAACATTTCAATCGTCTAAATGAGCATGAAGAGGAGGCGTTATTGGTAAAGCTTTGTGTTACCGATGATGAGACGGACCCTGAAATTATAGAATTAAATACAGTGGAAAATGTCGTTATCAGCGATAATGATGATCATTCTGAAGATTCAGAAAACTATAAAGTTTATTCCAGGCAACCGTATGCAAAAAGGACTCGTAAAAGCTATATATGTGACATTTGTCACAAAGAATTTCGTGGTAAATCCGATCTGACACGACACAAGTTTGTACACACGAATGAAAAGCCATACAAATGTAAATCATGTACCAAATGCTATAGACAAGAAATTAACTTAAGAAATCACATAACATCAGCTCATAAGAAAGAAAAAGAATTTGCCTGCAAACAGTGCCCAAAAACATTTGCTCTTAAAGAGAGATTACGTCTGCATATGCGTTTGCATACTGGAGAAAAACCTTACGGCTGCCAACAGTGTGAAAAACGCTTTGCTAGGGGCGGACAGTTGCATCAACACATGGTTACACATCACCAAGATGCTCCCAAGCAATTTAAATGTGAAATATGTTCAGAGCGCTTTTCAACAGCATCCAACCTAAAGGTTCATGTGCAGAGCCATGAGGAAACACCCGACTGGTTTTGTGAAATATGTAAAGAACATTTTGCCAATGATGTGCTTCTAAAGGCCCACGTTCATAAACTGCACTACAAACTCAAGCAACTAGATtgtgaaatttgtaaaaaaccCATTGAAGAGAACGATATGCTAAGTCATATGAAAACTCATAGCAATCTTAAAACCCATGTCTGTGAAATATGcaactcagtatttactcaaaaATCCCAATATAACGTACATATGCGTATGCATTCTGGAGAAAGGCCATTTCAATGCAGAaTTTGCTGCCAAACATTTGCCCACTCAAGCGttttaaaacttcacattaGAAAACACACGGGCGAAAAGCCTTTCAATTGTTTACTGTGCAAAGGTGAAGAAGTGGCTTTCTCGCAATTGGCCCATTTAAAAACCCACATGAAAAAGATTCACAAGCAATTGAAACCCTATATGTGCGAGGGTTGTCAcaacttttacaaaattaaaattgatcTAGAAGCCCATCAACTCGAATGTAAAAAGTGTACAACGAGTGTAGAGGAAAAAGATGCCCTGTCTATTGAATTACAAACATTGTCGCACTTACGTTTTCTTATGGCCATACTGCTGAAGAAAATCTCCTCCGAACAGAAATTGCAACAGCTGGGCTTCGAGAAACGTTTGATCGATAATGTTGTTATAGCTGCTTTAAAAGTGGCCAATCGCAAAGCCCATGAAGATTTGAAGTTGTCTCTTTTGGAAAGAATGCGCTTAAATGTGGAAGAATTTCTTAACTGGATTGTGCCCTCCAAGGTGATGGATAAGTTTCGCGAAGAAAACCAAAGTATCGacaatattttggaaaaaattgtgTCCATGTAtatgaaacaaaagtaa
Protein Sequence: MVRSRRSISKEDVSVLADSGISLSSPPASRKHFNRLNEHEEEALLVKLCVTDDETDPEIIELNTVENVVISDNDDHSEDSENYKVYSRQPYAKRTRKSYICDICHKEFRGKSDLTRHKFVHTNEKPYKCKSCTKCYRQEINLRNHITSAHKKEKEFACKQCPKTFALKERLRLHMRLHTGEKPYGCQQCEKRFARGGQLHQHMVTHHQDAPKQFKCEICSERFSTASNLKVHVQSHEETPDWFCEICKEHFANDVLLKAHVHKLHYKLKQLDCEICKKPIEENDMLSHMKTHSNLKTHVCEICNSVFTQKSQYNVHMRMHSGERPFQCRICCQTFAHSSVLKLHIRKHTGEKPFNCLLCKGEEVAFSQLAHLKTHMKKIHKQLKPYMCEGCHNFYKIKIDLEAHQLECKKCTTSVEEKDALSIELQTLSHLRFLMAILLKKISSEQKLQQLGFEKRLIDNVVIAALKVANRKAHEDLKLSLLERMRLNVEEFLNWIVPSKVMDKFREENQSIDNILEKIVSMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314024;
90% Identity: iTF_01074730;
80% Identity: -