Tgro041062.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465278.1:27368448-27379245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.42 54 6.1 0.0 6 23 390 407 390 407 0.98 2 9 1.2e-05 0.0015 20.4 2.4 2 23 414 436 413 436 0.95 3 9 1e-05 0.0013 20.6 0.1 2 23 442 463 441 463 0.97 4 9 0.0026 0.33 13.0 0.2 2 23 471 493 470 493 0.95 5 9 0.43 55 6.0 0.3 3 23 499 518 497 518 0.90 6 9 3.8e-05 0.0049 18.8 4.2 2 23 527 548 526 549 0.94 7 9 3.3e-06 0.00042 22.1 0.4 1 23 558 581 558 581 0.98 8 9 3.2e-06 0.00041 22.2 2.9 2 23 588 609 588 609 0.98 9 9 0.002 0.25 13.4 0.6 1 21 615 635 615 636 0.95
Sequence Information
- Coding Sequence
- atgagatGCCTTTTATGCTTAGAAGTAACTGAAAGTTATAAGGATTTGATTGTTTTTAACTCCAGCGAATGGCAGGAACTAAACATGAAGTATATTATTGAAAAGTATCTTTGGAAATTGGAAGTTTTAAATAGTCAATCCTATATATGCCAAGCGTGTTGGCAAGAATTATACAATTTCCAtaagttttacttaaaacttgaaaaagcccgctcaaatttaaatgatgtATTGAAGACTGAAGAAGTTAACAAAAAAGCTGTTGAAACAGGAAACGCAAAACctgaacttgaaattttaatttttaaagaggAATATTCTGTAGATATATTTGAAAAAGAATATGAAGATGAAGCAAGTTATCTTAAAACTAATAGCAATCGTAAATGCTCTGAAAAGGAAAgttcacatgacaaaaaaaatggaaaaaatagtTCAAGGAAAAGATCCAACAAAGAACAAAATAATATTGAAGTAAACGAACTAAAATCCAATGAAAATCCAGATGAAATTGACATAAAGTTAGAAGTTGAAAGAATAGAAAACGACAAGTCTGATGAAGAtgcaaataaaattgatatacaattaaaaataattgaaaattatgcTGAAGTCAGCAAAGTGGAAAATGGGGAAGAATCAATTTGCTTTAAAAGAAGTACTAAACGCAAATGCCATAGAAAGAAAAGTAGAAATgataagaaaattattgcaagaaaattttCGAGGAAAAGGTCCAGCAAAGACACAAgtaaaattgaaactgaaataAGAAAACTGAAATCCGATAAAAGTCCAGATGAAATTGACAAAAGGTTAGAAGttgaaaaaatagaaaaagacgCTAACGAAATCAGTATGATATTCGATGAAAATGTAGatgaacataaaataaaattagaattagaaataacagaaaatgacgctaaacaaaacaaaatggaGGAAGATGATAAGAATGATACTTCCTCCGATGATACTTCCTCGGATGATGCTTCCTCCGATGAGGCTGATTCAGATCCGTTAAATAAATTAGCGGACGAAGACAAATTCATagcagaaaattttcaaatcacTTGTGACATTTGTCAAATCCCACAGGATACATATTCCGCAGCGATGAAACATTTCAAAGATACACACAATCAGCGTGGATATATTAAGTGCTGCGGTAATAAGTTTGGGAGTCGTGTTGAATTAGTGGATCATATTAATGTCCACAAAAATCCCGAATATTTGAAATGCAAATACTGTAACAAAACGTTTTCTAAACGTGCAAGCGTGAAGaaacacataaaatatgcacatgAGGAAAGCAGGGTGGAATGTAACATTTGTGGTAAAAGTTTAGCAACTGAACCAGGTTTAAGAAGGCACATGTTAACACATAATACTGAAGATAAAAGGATATCTTGTCAACAATGTGGTAAATCCTATTTATCTATATACTCCCTACGCAATCACATTCAAGTTGCTCACTTAACAAATATAATTTGCCATTTATGTGGCAAATCTATTATAATATATGACTTCACACGTCATATGGCAGAGCATGAAGGAAAACCTCTACCAAAGGTAAGCTGTGAAATGTGTGATCGACAGTTTTCAGATAAGGGTTGTTTAAAACGCCACGTGCGGTCGCATCATCCACCGGAAGGAGCTataactgaatttaaatgtcCTGAGTGCACAAAAGTGTTTGCAGCTGATTATAACCTTAAGACGCATATTAGAAGAGTACACGATAATGCATATGCTAGAAAGTGTACGTTGTGtgataaaacatttaaaagaaacaaagcCCTAAAGGAGCACATGTCAAGGCATAGAGGAGAACCCTTATACGTTTGCGGCTTTTGTCctagaaaattttattccagTGGAAACATGTTCACACATCGCAAAATATGTTCCGGAAATCGAAAAGAAAGTGTAAAGAAAATCACAAGATGA
- Protein Sequence
- MRCLLCLEVTESYKDLIVFNSSEWQELNMKYIIEKYLWKLEVLNSQSYICQACWQELYNFHKFYLKLEKARSNLNDVLKTEEVNKKAVETGNAKPELEILIFKEEYSVDIFEKEYEDEASYLKTNSNRKCSEKESSHDKKNGKNSSRKRSNKEQNNIEVNELKSNENPDEIDIKLEVERIENDKSDEDANKIDIQLKIIENYAEVSKVENGEESICFKRSTKRKCHRKKSRNDKKIIARKFSRKRSSKDTSKIETEIRKLKSDKSPDEIDKRLEVEKIEKDANEISMIFDENVDEHKIKLELEITENDAKQNKMEEDDKNDTSSDDTSSDDASSDEADSDPLNKLADEDKFIAENFQITCDICQIPQDTYSAAMKHFKDTHNQRGYIKCCGNKFGSRVELVDHINVHKNPEYLKCKYCNKTFSKRASVKKHIKYAHEESRVECNICGKSLATEPGLRRHMLTHNTEDKRISCQQCGKSYLSIYSLRNHIQVAHLTNIICHLCGKSIIIYDFTRHMAEHEGKPLPKVSCEMCDRQFSDKGCLKRHVRSHHPPEGAITEFKCPECTKVFAADYNLKTHIRRVHDNAYARKCTLCDKTFKRNKALKEHMSRHRGEPLYVCGFCPRKFYSSGNMFTHRKICSGNRKESVKKITR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398920; iTF_01397853; iTF_01397848;
- 90% Identity
- -
- 80% Identity
- -