Tgro041065.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- PRDM5
- Assembly
- GCA_949987645.1
- Location
- OX465278.1:27403308-27406031[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3 8.1e+02 2.3 0.2 2 23 257 279 256 279 0.84 2 10 0.51 66 5.8 0.1 6 23 288 305 288 305 0.98 3 10 3.3e-06 0.00043 22.1 2.1 1 23 311 334 311 334 0.98 4 10 0.00048 0.061 15.3 0.2 2 23 340 360 339 360 0.95 5 10 1.1e-05 0.0014 20.5 0.2 2 23 369 391 368 391 0.95 6 10 0.25 32 6.8 0.5 3 23 399 418 397 418 0.92 7 10 0.00082 0.11 14.6 2.3 2 23 427 449 426 449 0.96 8 10 2.6e-07 3.3e-05 25.6 2.1 1 23 458 481 458 481 0.98 9 10 2e-05 0.0026 19.7 0.4 2 23 488 509 488 509 0.98 10 10 0.00034 0.043 15.8 0.4 3 23 517 538 516 538 0.97
Sequence Information
- Coding Sequence
- ATGAGTTGCCTTCTGTGTTTGGAAACAATTGGAATCTAtcaaaattcaataatttttaattctagcgAATGGCAGGAACTAAACATACAATATATCATTGAAAAGCATCTTTGGAAAATGGAAATTTTAAATGTTCAATCCTGCGTATGTGAAGCGTGTTGGCAAGAATTAAACAATTTCCACAAGTTTTACTCAAAAGTAGAAAGAGCTCATTCACATTTAAATGCAACATTGAACACAGACGTtgaaaaggaaaacaaaaaagaaacagccgaaatttctaataataataataaaaagaaattgaaagTTGAACCTgaaattttattcttaaaagaggaaaatgtgctagaaatttttgaaaaggaAGACAAGGAAgaagtaaatagtcttaaaagAAGTACTAAGCGCAAATGTGCTAGAAAGAAAAGTGGACATGAAGATAAAACTAATAATGaaacaaataaactaaaatccGAAGAGAAAGCCGGTGATATTGACACGAAATTACAATTGGAAAGGATAGAAAATGACGCTAAAGAAAACGTAATGAAATCCCATAAAAATGGAGATGAAATTGAATCAAAATTAGAGTTAATACCAATGGAAAATGGCACGAAAGAAGAAAACGTAGTGGAAGATAATCTTGATGATCAGAATCATAGCTTTGAAAGCGATGATGACTCTTCCACCCATGCGGTTGATGCATCTACATCGGATCAATTGCCGGATGAAGATGACAAATTCATAGCCGAACATTTTCAAATTACCTGTACTATTTGCCAAACTCCATTGGCTACATATACCATAATGCTCAAGCATTACAGAGACGAACACAAACAACGTGGATATGCTTCATGTTGTAGTAGAAAGTTTTATCCTCGCGTTGAATTAATCGATCATATTAAGCTTCACAAAAATCCCgaatattttaaatgcaaatactGCGATAAAATATTAACTAGACGCGCGAACCTAAAGTaccatataaaaaaagttcacgaACAAAATAATATAGAATGTGAAATTTGTGGTAAAATGTTAGTAAAATCCAGTCTAAAAAGGCATATGACATTACATGAAACGGATGATGATAAGAAGATACCTTGCAAACAATGTGGTAAAAACTTCTTCTCTAAACCCGCcttacaaaaacacatacaagTTGTTCACCAAAAAAGGAATTATCAAATTTGCGACTTATGCGGTAAATCTATACCGAAGAATAGCTTCAAACGTCATACTTTGGAGCATGAAGGAAAACCTCCACCAACTGTAAGTTGTGAAATTTGCGGTCGTCACTTATCCGATATGCCTTGCTTAAAGCGACACATGAGATTGAATCATCCACCGAAAGGAGTTACATCagaatttaaatgtactgaaTGCCAGAAAGTGTATAAAAGCAATTACAGTCTTAAAAGTCACATAAGAACCGTACACGAAAGTAAATACGCAAGAAAGTGTACATTGTGTGGGAAAACTTTTAAAGGACCCGCCCCTCTAAAGGAGCATATGTCTAGGCATGTTGGTCAACCATTACGCGCTTGCAGCTTTTGTCCTAAAGTATTTTATTCAAATGGCAACATGTATGCACATCGCAAAAGAGAGCATCCAATAGAATGGGAGAAATCTATTAGAGaaaaatattatggaaataCAACGAAAGATCAATAA
- Protein Sequence
- MSCLLCLETIGIYQNSIIFNSSEWQELNIQYIIEKHLWKMEILNVQSCVCEACWQELNNFHKFYSKVERAHSHLNATLNTDVEKENKKETAEISNNNNKKKLKVEPEILFLKEENVLEIFEKEDKEEVNSLKRSTKRKCARKKSGHEDKTNNETNKLKSEEKAGDIDTKLQLERIENDAKENVMKSHKNGDEIESKLELIPMENGTKEENVVEDNLDDQNHSFESDDDSSTHAVDASTSDQLPDEDDKFIAEHFQITCTICQTPLATYTIMLKHYRDEHKQRGYASCCSRKFYPRVELIDHIKLHKNPEYFKCKYCDKILTRRANLKYHIKKVHEQNNIECEICGKMLVKSSLKRHMTLHETDDDKKIPCKQCGKNFFSKPALQKHIQVVHQKRNYQICDLCGKSIPKNSFKRHTLEHEGKPPPTVSCEICGRHLSDMPCLKRHMRLNHPPKGVTSEFKCTECQKVYKSNYSLKSHIRTVHESKYARKCTLCGKTFKGPAPLKEHMSRHVGQPLRACSFCPKVFYSNGNMYAHRKREHPIEWEKSIREKYYGNTTKDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074752;
- 90% Identity
- -
- 80% Identity
- -